ID JX162592; SV 1; circular; genomic DNA; STD; VRL; 2572 BP. XX AC JX162592; XX DT 26-AUG-2012 (Rel. 113, Created) DT 26-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] clone pBuB10, DE complete genome. XX KW . XX OS Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2572 RA Martin D.P.; RT "The molecular characterisation of a Sida-infecting begomovirus from RT Jamaica and possible evidence for its recombinant origin"; RL Unpublished. XX RN [2] RP 1-2572 RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT ; RL Submitted (10-JUN-2012) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; 43840d199c71e4b39cc62c66bd3e97f7. XX FH Key Location/Qualifiers FH FT source 1..2572 FT /organism="Sida golden mosaic Buckup virus-[Jamaica:St. FT Elizabeth:2004]" FT /host="Sida sp." FT /isolate="Jamaica:St. Elizabeth:2004" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2004" FT /clone="pBuB10" FT /db_xref="taxon:929769" FT misc_feature 23..2433 FT /note="IR; contains conserved sequences essential for viral FT replication" FT gene 387..1157 FT /gene="NSP" FT CDS 387..1157 FT /codon_start=1 FT /gene="NSP" FT /product="nuclear shuttle protein" FT /function="responsible for moving viral DNA out of the FT nucleus & into the cytoplasm" FT /db_xref="GOA:E5KBY8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:E5KBY8" FT /protein_id="AFP99141.1" FT /translation="MYYFRGKRGGYFPNRRFISRNNMFNRSTAGKRYDGKRRGGRSVRP FT SEEPKMSAQTIHENQYGTDFVMAHNSAISTFISYPDLGKIEPGRSRSYIKLKRLRFKGT FT VKIERVQSDLNMDGTVSKIEGVLSLVVVVDRKPHLGPSGCLHTFDELFGSIIHSHGNLS FT IVPSLKDRYYIRHVFKRVLSLENDTHMVDIEGSTWLSNRRFTCWSSFKDVDRDSCKGVY FT DNISKNALLIYYCWMSDTPSKASNYVSFDLDYVG" FT gene complement(1219..2100) FT /gene="MP" FT CDS complement(1219..2100) FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /function="responsible for moving virus from cell to cell FT via the plasmodesmata" FT /db_xref="GOA:E5KBY9" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:E5KBY9" FT /protein_id="AFP99142.1" FT /translation="MDSQLVNPPHAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTAR FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRVGLRGPIEIRPGESWASRSTIGMGQSDAD FT SAVENEIHPYRHLNRLGTSVMDPGESASIVGDQRAGSNITISMGQLNELVRTTVQECIN FT HNCQASQAKSLK" XX SQ Sequence 2572 BP; 664 A; 514 C; 582 G; 812 T; 0 other; accggatggc cgcgcattgg tgaccccccc ctggtggtgg tgcccgcgcc ccccctggtg 60 ctgttctccc acgcgctctc tcattggtgc tggtgctcag gtttcttttt tgaccactct 120 ttaatttgaa ttaaagagag tataggtact cgcgcgcgta taatcgaaat ttgaataatt 180 tccgcgcgtc tcatgaacat ggcccattgt actacatggt cgacgtgtct gattctggac 240 catgttgctg agtctgttta accattttga acaactatat ctatataatt gaggagtttg 300 atataatata ttcgatctga ctcagctttc taccacgttt atagttttat ctatattttt 360 gatttaacat ttgttattgt ctaaccatgt attattttag aggtaaacgt ggtggttatt 420 tccctaatcg aagatttatc tcacgtaata atatgtttaa tcgttcaacc gctgggaagc 480 gatatgatgg gaaacgtcga ggaggtcgat ctgtcaggcc cagtgaggaa cccaagatgt 540 cagcccaaac catacatgaa aatcagtatg gcactgattt tgtcatggcc cataattcag 600 ctatctcgac gttcatcagt tatccagact tgggcaagat agaaccggga cgaagcaggt 660 catatatcaa gttgaaacga ctccgtttca aagggactgt gaagattgaa cgtgttcaat 720 cggatttgaa catggacggg actgtctcca aaatagaagg agtattatcg cttgttgttg 780 ttgtggatcg gaaaccccac ttgggtccaa gtggttgtct gcatacattc gacgagctgt 840 ttggatcaat cattcacagt catggcaatc ttagcattgt cccttctctg aaagaccgtt 900 attatattcg ccacgtgttc aaacgtgttt tgtcattgga gaatgataca catatggtcg 960 acatcgaagg atctacatgg ttatctaaca ggcgttttac gtgttggtcc tctttcaaag 1020 acgtggatcg tgattcatgc aagggtgttt atgataatat aagcaagaac gccttgttaa 1080 tctattattg ctggatgtcc gatacgccct ctaaggcatc caattatgta tcttttgatc 1140 ttgattatgt tggttaactt aataaattgt gtttatccaa aaatgactaa tttaatacga 1200 taaatcaaaa gatatcgttc atttcaatga tttggcttga gaagcctgac agttatgatt 1260 aatacattct tggaccgtag tcctgactaa ctcgttcaac tgtcccattg atatcgtgat 1320 attggacccc gctctctggt ctcccacaat agaagcagac tctcctggat ccataacgct 1380 ggtccccagc ctgttcaggt gtctgtatgg gtggatctcg ttctccaccg ctgagtccgc 1440 atctgattgg cccataccta tggtactcct ggaagcccat gactcgccag gccttatttc 1500 aattgggcct cgtaatccaa cccttgacat ggacgcgcat ctgatgggct tcctttccca 1560 tttcccataa tccacatggg aaaagtccac atccttgtct gtgaactgtt tggatagtat 1620 cttcactgtt ggtgcccgga aggggatgtc gacggagtgt ttggctgtgg acaatttcag 1680 tttccctttg aacttggcga agtgggtccg ttgatgaaca ttcgtatcgc acactctgta 1740 gtacaacttc catggaattg ggtccttcaa cgagaagaac gaagccgaga aataatggag 1800 atctatgttg cacctgatcg gaaaagtcca tgacgcctgt aatgactcgt tgtccgtcat 1860 ccttttgtcg tggatctcca caattactga tcctgtggcg ttgattggta cctgttgcct 1920 gtattctatg acgcagtggt cgatcttcat gcagctacga ctgagtcgag ctgttaattg 1980 agaagccgtt gaagggaatt gcagtattat ctcagttagg tcatgagaaa gctgatattc 2040 atcacggtga gattctatgt aattgaaggc atgtggagga tttactaact gagaatccat 2100 atgaagaaga aaggccgcgc agcggaaccg attgctgaag ttgaatcggg aagaagatga 2160 acaactctgg aaagctctcc tttgatctcg aagaaggtaa agattttctt ttctttctgt 2220 gtttgagaat gctttttgtg ttaattttat tctgggaact atgtgataat gtataactgt 2280 ttaatgatta tgattttgag aaagaaaaga gagttgatga agaatttaag aaaacccaga 2340 aaatggaata ggttgtgtgt gaacccatac ttgctgggat tctggtattt aaattggtaa 2400 agcgttcatg agaagttctt acttccggtg aatggcattt ttgtaataag aagtgtgtac 2460 cccggttgag ctctctcaaa ctttctcatt caattggggt aatgggttac aatatatagt 2520 ataaccttca tttatggatt tgctacacgt ggcggccatc cgctataata tt 2572 //