ID JX162591; SV 1; circular; genomic DNA; STD; VRL; 2627 BP. XX AC JX162591; XX DT 26-AUG-2012 (Rel. 113, Created) DT 26-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] clone pBuA9, DE complete genome. XX KW . XX OS Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2627 RA Martin D.P.; RT "The molecular characterisation of a Sida-infecting begomovirus from RT Jamaica and possible evidence for its recombinant origin"; RL Unpublished. XX RN [2] RP 1-2627 RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT ; RL Submitted (10-JUN-2012) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; f63e428e1d0ac506fada3faa9bfeacee. XX FH Key Location/Qualifiers FH FT source 1..2627 FT /organism="Sida golden mosaic Buckup virus-[Jamaica:St. FT Elizabeth:2004]" FT /host="Sida sp." FT /isolate="Jamaica:St. Elizabeth:2004" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2004" FT /clone="pBuA9" FT /db_xref="taxon:929769" FT misc_feature 23..2488 FT /note="IR; contains conserved sequences essential for viral FT replication" FT gene 210..965 FT /gene="CP" FT CDS 210..965 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /function="responsible for viral encapsidation" FT /db_xref="GOA:E5KBW4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E5KBW4" FT /protein_id="AFP99136.1" FT /translation="MSKRDGSWRSIAGMSKVKRTLNFSPRGGGGPTSSRAAEWVNRPMY FT RKPRIYRTLKTPGVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVYNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(962..1360) FT /gene="REn" FT CDS complement(962..1360) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer" FT /function="enhances replication" FT /db_xref="GOA:J7HI54" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J7HI54" FT /protein_id="AFP99138.1" FT /translation="MDSRTGELITVPQAENGVYTWEIENPLHFKMYQVEDPLYTNTRIY FT TIQIRFNHNLRKALHLHKAFLNFQVWTISMTASGSTYLARFSRLVNLYLDRLGVISINN FT VIRAVRFATNRSYIEHVLENHSIKFKIY" FT gene complement(1107..1496) FT /gene="TrAP" FT CDS complement(1107..1496) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /function="activates the transcription of the CP and NSP" FT /db_xref="GOA:J7HEQ7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J7HEQ7" FT /protein_id="AFP99139.1" FT /translation="MRSSSPSHPPSIKQKHKQAKKRAIRRRRIDLECGCSIYFHIGCTG FT HGFTHRGTHHCTSGREWRIYLGDRKSPTFQDVPSRGPVVHEHQDIHHTNTVQPQPEESV FT ASPQSLPELPSLDDIDDSFWVDLFS" FT gene complement(1408..2544) FT /gene="Rep" FT CDS complement(1408..2544) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /function="responsible for viral replication" FT /db_xref="GOA:J7HBF6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7HBF6" FT /protein_id="AFP99137.1" FT /translation="MRKFERAQPGYTLIITKMPSIKRFKVSAKNYFLTYPQCSLTKEEA FT LSQLQNLTTPVNKKFIKVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDMVSPTRSVHF FT HPNIQGAKSSSDVKSYVEKDGDTIEWGQFQIDGRSARGGQQSANDSYAKALNAGSAEAA FT LQIIREEQPQHFFLQNHNLVANATRIFQKAPEPWVPPFQLSSFTNVPDEMQEWADGYFG FT GGSAARPDRPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDV FT APQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEEN FT TGLKNWTLKNALFITLTSALYQTETQASQEEGHQETAD" FT gene complement(2079..2336) FT /gene="AC4" FT CDS complement(2079..2336) FT /codon_start=1 FT /gene="AC4" FT /product="aC4" FT /function="potential gene silencing suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5KBW6" FT /protein_id="AFP99140.1" FT /translation="MGSLISTFSYSSKASTSARITDSSIWCPQPGQYISIRTYRELNPA FT PTSSPTSRRTETPSNGGNSKSTADLLEEVSSQLTIHMPRR" XX SQ Sequence 2627 BP; 637 A; 592 C; 632 G; 766 T; 0 other; accggatggc cgcgcatcgg tgtacgctcc cccccccgcg cggtcccccc accccgcgcg 60 atctttaatt tgaattaaag atggaccaga cgctctcgtc caatcataac gcgtctgacg 120 agtctatata ttttaaacaa cttgggcgct aagttgttgt gtgaccgtta taaattaaat 180 atgatttggc ccactgtctt taactcaaaa tgtctaagcg cgatggctct tggcgctcta 240 tcgcgggaat gtcaaaagtg aaacgcactt tgaatttctc ccctcgtgga ggtggtgggc 300 cgacaagttc aagggccgct gaatgggtga acaggcccat gtacaggaag cccaggatat 360 accggacgct aaaaacaccc ggagtgccca gaggctgtga aggcccgtgt aaggtccagt 420 cgtatgagca acgccacgac atctctcatg tgggaaaggt catgtgcatc tccgatgtga 480 cacgtggtaa tggcattacc catcgtgtgg gtaagcgttt ttgtgttaag tctgtgtata 540 tccttggtaa gatatggatg gacgagaaca tcaagctcaa gaaccacacg aacagtgtca 600 tgttctggtt ggtcagagac cgtagaccct atggcacgcc aatggatttt ggccaagtgt 660 tcaacatgtt cgacaatgag cctagcactg ctacggtgaa gaacgatctt cgtgatcgtt 720 atcaagtgat gcacaagttc tatggcaagg tgacaggtgg acagtatgcc agcaacgagc 780 aggctatagt caaacgattc tggaaggtct acaatcatgt ggtctacaac catcaagagg 840 ctggcaagta cgagaatcat acggagaacg ccctgttatt gtatatggca tgtactcatg 900 cgtctaatcc cgtgtatgca actttgaaga tcagaatcta tttctacgat tcgatcacta 960 attaataaat tttgaatttt attgaatgat tttccagtac atgttcgata tacgatctgt 1020 ttgtcgcgaa tcgtacagct ctaattacat tgttaattga aatcacgcct aatctatcta 1080 aatataaatt aactaagcga ctaaatctag ctaaataagt cgacccagaa gctgtcatcg 1140 atatcgtcca gacttggaag ttcaggaagg ctttgtggag atgcaacgct ttcctcaggt 1200 tgtggttgaa ccgtatttgt atggtgtata tcctggtgtt cgtgtacaac gggtcctcta 1260 cttggtacat cttgaaatgt aggggatttt ctatctccca ggtatatacg ccattctctg 1320 cctgaggtac agtgatgagt tccccggtgc gtgaatccat gaccggtgca gcctatgtgg 1380 aagtatatgg agcaaccgca ctccagatca atccgccgtc tcctgatggc cctcttcttg 1440 gcttgcttgt gtttctgttt gatagagggc ggatgtgagg gtgatgaaga gcgcattctt 1500 caatgtccag ttcttgagac ctgtattttc ctctttgtct aggaagtctt tataactggc 1560 accctcacct ggattgcaaa gcacgattga tggaatccct cctttaattt gaactggctt 1620 gccgtatttg caatttgact gccagtcctt ctgggccccc agaagttctt tccagtgctt 1680 tagctttaaa tattgcggtg cgacgtcatc aatgacgtta tactccactt cgtttgaaaa 1740 aactcgggaa ttgaagtcca ggtgtccact aaggtaattg tgtgggccta atgcacgtgc 1800 ccacatcgtc ttccctgtcc tcgaatcacc ttccactatg atactaactg gtctgtccgg 1860 ccgcgcagcg gaacctcctc caaaataacc gtccgcccac tcttgcatct catcgggaac 1920 gttagtgaat gacgagagtt gaaacggagg gacccacggt tccggagcct tttgaaatat 1980 tctggttgcg ttagcaacca ggttgtggtt ctggaggaag aaatgttgcg gttgttcttc 2040 ccttattatt tgcagagctg cctctgctga accggcgttc aacgccttgg catatgaatc 2100 gttagctgac tgctgacctc ctctagcaga tctgccgtcg atttggaatt gcccccattc 2160 gatggtgtct ccgtccttct cgacgtagga cttgacgtcg gagctggatt tagctccctg 2220 tatgttcgga tggaaatgta ctgacctggt tggggacacc atatcgaaga atctgttatt 2280 cgtgcactgg tacttgcctt cgaactgtat gagaacgtgg agatgaggct ccccattttc 2340 gtgtaattct ctgcaaacct tgatgaactt cttgtttact ggagttgtta ggttttgtaa 2400 ttgggaaagt gcttcttctt tagtaagaga gcactgggga tatgtgagga aatagttttt 2460 agctgagact ttgaaacgtt taatcgatgg catttttgta ataataaggg tgtaccccgg 2520 ttgagctctc tcaaactttc tcattcaatt ggggtaatgg gttacaatat atagtataac 2580 cctcatttac tgatttgcta cacgtggcgg ccatccgcta taatatt 2627 //