ID JX134222; SV 1; linear; genomic RNA; STD; VRL; 8050 BP. XX AC JX134222; XX DT 22-AUG-2012 (Rel. 113, Created) DT 27-FEB-2014 (Rel. 119, Last updated, Version 2) XX DE Bluegill picornavirus isolate 04-032, complete genome. XX KW . XX OS limnipivirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Paavivirinae; Limnipivirus; Limnipivirus A. XX RN [1] RP 1-8050 RX PUBMED; 24337169. RA Barbknecht M., Sepsenwol S., Leis E., Tuttle-Lau M., Gaikowski M., RA Knowles N.J., Lasee B., Hoffman M.A.; RT "Characterization of a new picornavirus isolated from the freshwater fish RT Lepomis macrochirus"; RL J. Gen. Virol. 95(PT 3):601-613(2014). XX RN [2] RP 1-8050 RA Barbknecht M.J., Hoffman M.A.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Microbiology, University of Wisconsin-La Crosse, 1725 State St., La Crosse, RL WI 54601, USA XX DR MD5; a8ede2129bc6cf30750eb191efadc068. DR EuropePMC; PMC3446573; 22787214. DR EuropePMC; PMC4376133; 25726971. XX FH Key Location/Qualifiers FH FT source 1..8050 FT /organism="limnipivirus A1" FT /host="Lepomis macrochirus" FT /isolate="04-032" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Nov-2003" FT /db_xref="taxon:2870351" FT CDS 713..7723 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:J7HCF4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:J7HCF4" FT /protein_id="AFP96991.1" FT /translation="MELLNDLVAPVMTKVADVAEVAVGGLLDDVAHPVETPNVILTDQS FT AVSESELYAAGEDPPALTASSVQQEVGQVNVQRYMRLQGGTWDSTQVAETAIAEWTLPD FT VFNSPRLPTTNLMRNYLWMRSDFEFNLIVSANMGFAGALVLVYVPNNAYYQFKTFRNFP FT HAIINCGLNTSARLKIPYINQTQYCGISGDTDNCGKLKLISLATLKTPSAGGQQANWTL FT YGRLVAPEFQAFAVLEGKDSCVRVEEAMGSMYLASRHHTALRPRMGLTSEHADPDQRVA FT GDSAYTSLKEVVAIESFWQALDWTYIDEVGKRLTISNVVVDSSELTGGISRKTNLGFLS FT NFYLAYQGDLVVTIQAVASRLNQGKLLVVFYPGEDNKDKDVTMDKVNNAFTQILDLGSK FT TTVRFTLPFVNQQPYRPMSNVHGRFAVFVLNPLTYTPACPSAVRILFYIGAGSSFNFVY FT PKQSAVKFQAPERNQVGDATSADGAPITNIEDETSNTRVQKRPVFRNVKATLPRQIKSN FT HMLLSNLVGRAFALEPYTSTSTGGQNILLKENNLSFLKVFKLLLYRSGDMTLHVSHTAV FT SPLYMAHSYIQTAIAGTTSADRLSQIMSQGSVCVMSNSAASLCVPFYVMTPFVKTADFG FT RLFVEGQNDSTWIMWIGATFDTDTRFYFLQSPPDIALGENEKEEPEDLEWVEEEGHRQT FT EVETIQRFLEGRGLFPVHKTCDINDRDGMYMTCYSEVTIGDKTFRANSFWRTKSLLKAY FT RMCKEFVRESDNQELLKCGDVESNPGPDIWRNRITGCMAVQEGAALYYSPNKQIVDNIY FT VLPVQNHIEDWERYSHFTMACLEPIWTAQMPRLQHTNTIAVNNPAPNTVAAAITLMAMR FT VNGPRWLVKFIFPFLHAANMWDLSTGWFHFFRLLRSGDVEQNPGPINIRYCTDEEHIRY FT ALKVHNLKSIEIVNRDFFQEIGEKTIHLQIVDTKHWRNLTLTDSEEKTLMKIGKDLITN FT DMKLTTPVGLGRVEHLIEKTHLLTGLRFLKIVNPEGRISDTLAWFLGWEKSGLERVHVL FT TTMMADGNITRIVDGITDSIARTCVKGMIRAVLYTLIFSLTPNAVARGAIAALAAFDLT FT TSILDAFRNMSLKRLAEYLIPEMENKQEYTRERTNLLAKVNKVMRHNEMKQDEWFDAVD FT DTQEVVTEQGQLGFNTFTLVSKNLGWWITKIQELADKLQQWYNPDRVQVAKTTLEEVKE FT KIIDALTETEALMAKVKVQGVPTQADRDEWQQKFDTLTKFYKLSLVVPNCPVSRNIGIV FT LNNMKRMQLGHQKPKDPIRVDPVAIHFCGEPGQGKTVLMTRLTNALAKALNTEVYTHAT FT GSNYFDGYCGQGVHYIDEFMANTDEQEASLALQLMGSSQVILPMADVDQKGMYYKGKVL FT ITTSNTSPVSDSKLKAPKALKRRFMVVGFRAATYYQKITNGAMCIDLAKATKTGALQDG FT SCWECEIDGKWRTFSFYDFVDMILAKVKSNQLVHQALLEQMKQDEEQMKKYAVLAQGSE FT DEEKQMTDDEFDQLLSEMRDLTKEMTQMSSDLEIFHEARETAVVPPDIRSKVVKAMQDC FT WANIVSTDIKTLLERVSLAVTVIRVSTTIYDMIKGFRATEEQRAYNPTTKPGLTRVLKK FT TARAGPIQVEGGNNSTEYKHILDSMVHLEFESGLRSTGFCVGQRDIFVYAHGVGEGSMM FT FEHRSVAYEIPEDMYEVEQFVTGQGKMDMARIVIDSSIGLEFKGMWKHIAKPIFSRDAL FT LITKMDNLFREREAGTVKDAGMIVMKDFDGNIQGMRMNEISYYALTVRGDCGSLLLQKQ FT YGTWKIIAMHNGSRQGLAYGVRLDVCIAKYEGLVTSKTPSDDVFFQPPKSAIHKSPFYG FT IQEATMQPAPLRATDQRITVPIENLTKEAAEKYRVDQFDVDLNTFAVAKARVLERIRPH FT VKVGRSIPMEEAITGAGTNPIDKNTSPGLKYTRDHLKKSDLFTIDEKGNAVVSDRLRAD FT VEEQEELLQSGGYPTTTFTACLKDELRADEKVALGKTRVIEAGELDYVILYRMHMNSIY FT RDLYNAYSGDVGVAAGINPLAEAARLREDLSQYDSFLALDYSRFDGSLSEKLMRAAVDI FT LADLHEDPDLVRRLHEPVVISKHLVVDEDWIVTGGMPSGSPCTTVLNCICNLLVLDYAM FT LVHHDVYEDGVGLPQCDYLSVVYGDDCVVAYNGMRMGLDFAQTIEDTFGMTVTPASKLG FT DHFNVELHEVEFLKRKFMAFETEEGYKVAILALNENVIVQHLMWMRNLTTLPQQIQSLM FT MEYAAYGKEKYDKLRDTMKRRLAKQNLQITVPGYDISWTMLNSVVMGDE" FT mat_peptide 713..1426 FT /product="VP0 capsid protein" FT mat_peptide 1427..2113 FT /product="VP3 capsid protein" FT mat_peptide 2114..2998 FT /product="VP1 capsid protein" FT mat_peptide 2999..3049 FT /product="2A1" FT mat_peptide 3050..3457 FT /product="2A2" FT mat_peptide 3458..4237 FT /product="2B" FT mat_peptide 4238..5263 FT /product="2C" FT /note="contains NTP-binding motif" FT mat_peptide 5264..5575 FT /product="3A" FT /note="membrane-associated protein" FT mat_peptide 5576..5656 FT /product="3B (VPg)" FT mat_peptide 5657..6250 FT /product="3C proteinase" FT mat_peptide 6251..7720 FT /product="3D RdRP" XX SQ Sequence 8050 BP; 2441 A; 1537 C; 2006 G; 2066 T; 0 other; tttaaatggt gaccttaaac gggaaatgcg ttttccgttc tttggatatc catttaacgt 60 gtaccctata cgataattgg ggtggattct ggatgcctag ttccagtgat tggttaagaa 120 ctcgtttact acgtatagta tgattagcaa agtgctcgat tgatcacgta atgatctatg 180 tggttaaaaa cccagtagta tggtatatac tcagtagtgt acactgtgag tacaactctt 240 ggcgtagaga gaacaattca cccgaatccg tggcgtatcc atggaaataa gtttacctaa 300 ttgtatgtta caaggcatat gagacattta tgagatatgg tttattttga ctaaacgagt 360 gtagaggtgg tggagtctat ccaacttcaa gccatgcaat tgttgtgttg attgatatca 420 ttgaccattt ttgtggattg tgtacacata caatttgaaa attaaccccc tcaagaataa 480 gacatgggac cattcgtggt agataccgtg ctcggatgct tgagattaga tgggttagac 540 tagttttgga atgagattgc cgagaaagtc ccgctagaca tgttttacaa gtcgtggtat 600 tccgctagac tttttcgcag acacatggaa gggtccatgt gttgtgcaat tgcagggtga 660 cagcccaact gcagagtttt ccttactaga ataaaaatct gttgtcaatt ttatggaatt 720 gttaaatgat cttgttgcgc ccgtaatgac taaagtagcc gatgtggctg aagtagcagt 780 tggaggactc ttggatgacg tagcacaccc ggtggaaaca cctaatgtga tactgacgga 840 tcagagtgca gtgagtgaga gcgagctata tgcggccgga gaagaccctc ctgcgttgac 900 cgcatcaagc gttcagcagg aggttggaca ggtgaatgta cagaggtaca tgagacttca 960 aggaggaact tgggactcaa cccaggttgc agagacagct attgctgaat ggacactacc 1020 agatgtgttc aactccccac gattacccac aacaaatttg atgagaaact acttgtggat 1080 gagatcagac tttgagttca atttgattgt gagcgcaaac atggggtttg ctggagctct 1140 tgtgttggtg tatgttccaa acaatgcata ctaccaattt aaaacattca gaaactttcc 1200 acatgctatt ataaattgtg gattgaacac aagtgcaaga ttgaagattc catacataaa 1260 tcagacccaa tactgcggaa tctctggaga cacagacaac tgtgggaaat tgaagctgat 1320 ttcattggca actctcaaga ccccatcagc aggtggacaa caagcaaatt ggacactgta 1380 tgggagattg gttgcccctg aattccaagc ctttgctgtt ttagaaggaa aagacagctg 1440 tgtgagagtt gaggaggcaa tgggcagtat gtacctggca tccaggcatc acactgctct 1500 gagacccagg atgggtctaa catcagaaca tgctgaccct gatcagcgtg ttgctggaga 1560 ttcagcctac accagtttga aagaggttgt ggcaattgaa tcattttggc aagccctgga 1620 ctggacttac atagatgaag ttggaaagcg gctcaccatc agcaacgtgg ttgttgattc 1680 aagtgagctg actggaggaa taagtcgcaa aacaaatttg ggatttttga gcaattttta 1740 tttggcatac cagggcgacc ttgttgtgac tattcaagca gtcgcttcaa gactaaatca 1800 gggaaaactt cttgtggtct tttatcctgg agaggataat aaagacaagg atgtgacaat 1860 ggacaaggtg aacaatgcgt tcacacagat tctggacttg ggatcaaaaa caacagtcag 1920 attcacattg ccgtttgtga atcagcaacc atacagacca atgtcaaacg tgcacggccg 1980 ctttgctgta tttgtgctta acccgctaac atataccccc gcatgcccaa gtgctgttcg 2040 cattttgttt tacattggtg ctggatcgtc attcaacttt gtgtacccaa aacaatctgc 2100 tgtaaaattt caagcaccag aacggaatca ggtgggcgat gctacatcgg ctgatggagc 2160 accgatcacc aacattgaag atgagacatc gaacactcgt gttcaaaaac gcccagtgtt 2220 taggaatgtt aaagcgacac ttccgcgcca gattaaatca aaccacatgc ttctgtccaa 2280 cctagttgga cgtgcctttg ctcttgaacc gtacacttca acaagtacgg gaggacaaaa 2340 cattttgctg aaggaaaaca acttgtcatt tttgaaggtg tttaagctcc ttttgtatcg 2400 gagtggagac atgactcttc atgtttcaca caccgctgta tcacctcttt acatggcaca 2460 cagttacatc cagacagcaa ttgcaggaac aacatctgcg gaccgcttgt cccagataat 2520 gtcacaagga tctgtatgcg tgatgtcgaa ctcagcagca agcctttgtg tgccttttta 2580 cgttatgaca ccattcgtga agaccgcaga ctttggcaga ctgtttgtgg aaggacaaaa 2640 tgactcaaca tggatcatgt ggataggagc aacatttgac acagacacca gattttactt 2700 tttgcagtcc ccccccgaca ttgctcttgg agagaacgag aaagaagaac cagaagactt 2760 ggaatgggtt gaggaggaag gtcacagaca gacagaagtt gaaaccattc aaaggttctt 2820 ggaaggaaga ggactcttcc cagtacacaa gacatgtgac attaatgaca gagatggcat 2880 gtacatgact tgttattcag aggtgaccat tggagacaaa acattcaggg caaactcttt 2940 ttggagaaca aagtccttac ttaaggctta caggatgtgc aaagaatttg taagagaatc 3000 agacaaccag gagctactca agtgtggaga tgtggagtct aacccaggtc cagatatttg 3060 gagaaaccgc atcacaggat gcatggcagt tcaagaaggg gcagcgctct attacagccc 3120 aaacaaacag attgtggata acatttatgt gctgccagta caaaatcaca ttgaggactg 3180 ggagagatat tcccatttta ccatggcttg tcttgaacca atctggacag cccagatgcc 3240 ccgacttcaa cacacaaaca ctatagctgt aaacaaccca gcaccaaaca ccgttgctgc 3300 tgccattaca ctgatggcaa tgagggtcaa tggacctaga tggttggtga aattcatttt 3360 tcccttcctt cacgctgcga atatgtggga cctttcaaca ggatggtttc actttttccg 3420 gttgttgagg agcggagatg ttgaacagaa ccctggacca attaacatcc ggtactgcac 3480 tgatgaagaa cacattagat atgcgttgaa agtgcataac ctgaagtcca ttgagatagt 3540 gaaccgggat ttttttcaag aaattgggga gaaaaccatt cacttgcaga ttgttgacac 3600 aaagcattgg agaaatttga cacttactga ttcggaagag aaaacactga tgaaaattgg 3660 taaggacttg atcacaaatg atatgaaatt gacaacaccc gttggacttg ggagagtgga 3720 acatttgatc gaaaagacac accttctgac gggactaagg ttcttgaaga ttgtgaatcc 3780 tgaaggtcgc atatctgaca cacttgcttg gttcttgggt tgggagaaat ctggactcga 3840 gagagtacat gtgctgacga caatgatggc agatggtaac atcacccgca ttgttgatgg 3900 gatcaccgat tccattgccc gcacatgtgt taaaggaatg ataagagcgg tgttatacac 3960 attgattttt tctttgacac caaatgctgt tgcaagagga gcaatagcag ccctagcggc 4020 ctttgatttg accactagca tcctagatgc gtttcgaaac atgagcctga aaagactagc 4080 agagtacttg ataccagaga tggagaacaa gcaggagtac accagagaga ggaccaatct 4140 cctagcaaaa gtgaacaaag ttatgcgaca taatgagatg aagcaagatg agtggtttga 4200 tgcagttgat gacacacagg aggttgtcac agaacaagga caacttgggt ttaacacatt 4260 caccttggta tcaaagaacc ttgggtggtg gataacaaag attcaagaat tggctgacaa 4320 actacaacag tggtataacc cagacagagt ccaagttgct aagacaacgt tggaagaggt 4380 taaggagaag atcattgatg ctttgacaga gactgaagcc cttatggcca aagtgaaagt 4440 acaaggggta ccaacacaag cagacagaga tgagtggcaa cagaaatttg acaccttgac 4500 caagttttac aaactgagcc tggtcgttcc aaattgccca gtgtcaagaa acattgggat 4560 tgtgctaaac aacatgaaga gaatgcaact tgggcaccaa aaacctaagg atccaattcg 4620 agttgatccg gtggcaattc atttttgtgg agagccagga cagggaaaga cagttctgat 4680 gactagattg acaaacgcat tggctaaggc cctgaacaca gaggtgtaca cacacgcaac 4740 aggaagcaat tattttgatg gttattgtgg acaaggtgtg cactacattg atgagttcat 4800 ggctaacaca gatgagcaag aggcttcact ggctttgcaa ttgatgggct cgtcccaagt 4860 gattttgcca atggcagatg ttgaccagaa agggatgtac tataaaggaa aagtgttgat 4920 aacaacttca aatacaagtc cagtgagtga cagcaaacta aaagcaccaa aagcattgaa 4980 aagaaggttt atggtagtcg gctttcgagc tgcaacctat taccagaaga tcaccaatgg 5040 tgcaatgtgc attgatttgg ctaaggcaac gaagacagga gcacttcaag atggatcttg 5100 ttgggagtgc gagattgatg gcaaatggag aacatttagt ttttatgact ttgttgacat 5160 gattttggca aaagtgaaga gcaaccaact ggtgcaccaa gcacttcttg aacaaatgaa 5220 gcaagatgaa gaacagatga agaagtatgc tgtgctagcc caagggagcg aagatgagga 5280 gaaacaaatg actgatgatg aatttgacca attgctgagt gagatgagag atttgactaa 5340 agagatgaca caaatgagca gcgatctcga gatttttcac gaggcgcgag agacagctgt 5400 tgttccgcct gacattcgga gcaaagttgt aaaggccatg caggactgct gggccaacat 5460 tgtttcaaca gacattaaga cactgctaga gagagtgtct ttggcggtca ctgtgatcag 5520 agtaagcacc accatttatg acatgattaa agggttccgt gccacagaag agcaaagagc 5580 ctacaaccca acaacaaaac ctggactgac aagagtgctg aagaagacag caagagcagg 5640 acccattcaa gttgaaggag gaaacaacag tacagagtac aaacacattc ttgattcaat 5700 ggtacatttg gagtttgaga gtggattgag gagcactgga ttttgcgtgg gacaacgcga 5760 catttttgtg tacgcacacg gggtcggaga aggatccatg atgtttgaac acaggtctgt 5820 tgcatatgaa attccagagg acatgtatga agtggaacaa tttgtaactg gacaagggaa 5880 gatggacatg gctcgcattg tgattgattc gtcgatcgga ttggagttta aaggaatgtg 5940 gaaacacata gccaagccca ttttttcccg cgatgctttg ctaataacaa aaatggacaa 6000 cttgttcaga gagagagaag cagggacagt caaggacgct ggaatgattg tgatgaagga 6060 ttttgacgga aacattcaag gcatgaggat gaatgagatt tcatactatg cgctcactgt 6120 tcgaggagat tgtggatcat tgctgcttca gaagcagtat ggaacttgga agatcatagc 6180 gatgcacaac ggatctaggc aaggacttgc ctacggcgtg aggcttgatg tgtgcatagc 6240 aaagtatgaa ggacttgtga ccagtaagac accctctgat gatgtgtttt tccaaccccc 6300 caaaagtgcc atacataaat caccttttta tggtattcaa gaagcaacaa tgcaaccagc 6360 gccactgcga gcaactgacc aacggataac tgttcctatt gaaaatttga caaaagaggc 6420 agctgagaag tatagagttg accaatttga tgttgatttg aatacgtttg cagtggccaa 6480 ggctagagtt ctggagagaa ttcgcccaca tgtgaaagtt ggtagatcca ttccaatgga 6540 agaagcaatc actggagcag gaacaaaccc cattgacaaa aatacaagcc ctggactgaa 6600 gtatacgaga gaccatttga agaagagtga tctgttcacc attgatgaga aagggaatgc 6660 tgttgtttca gaccgactga gagccgatgt tgaggagcag gaggaacttt tgcagagtgg 6720 aggttaccca acaacaacat tcacagcatg tttgaaggat gagttgagag cagatgagaa 6780 ggtggcactt ggaaagacga gagtgattga ggctggcgag ctggactacg tcattctgta 6840 ccgcatgcac atgaactcta tttatagaga tctgtacaat gcgtacagtg gcgatgttgg 6900 tgtggctgct ggaatcaatc ccctggcgga agcagcaagg ctgagagaag acttgagtca 6960 gtatgactca tttttggctt tggactattc tcgttttgat ggttcactgt ctgagaagtt 7020 gatgagagct gctgttgaca ttttggccga cctgcatgaa gacccagacc tggtgagaag 7080 attgcatgaa cctgtggtga ttagcaagca cctggttgtt gatgaagact ggattgtaac 7140 gggaggaatg ccatctggca gcccttgtac cactgtccta aactgcattt gcaacctgtt 7200 ggttcttgac tacgccatgc ttgtgcatca tgatgtgtac gaagatggag ttggacttcc 7260 ccagtgtgac tatttgtcgg tggtgtatgg agatgattgc gttgtagcct acaatggcat 7320 gcgcatggga cttgattttg cccaaacaat agaagacact tttggcatga ctgtaactcc 7380 tgcatcaaaa cttggtgacc actttaacgt tgaactgcat gaagtggagt ttttgaagag 7440 aaagttcatg gcttttgaga ctgaggaagg atataaggtg gcaattttgg cccttaatga 7500 gaatgttatt gtacagcatt tgatgtggat gagaaacctg accacactgc cacaacagat 7560 ccaaagcctg atgatggagt atgccgccta tggaaaggag aagtatgaca aactccgtga 7620 cacaatgaaa agacgattgg ctaaacagaa cctccaaatt acggtacccg gatatgatat 7680 ttcatggacc atgctgaata gtgtggttat gggagatgag tgaagactac gatgcgattt 7740 tgtttggcga tgaccttgga ctggagacta tgattttgga tatctttgaa atactcgata 7800 gtgtatgact cggaccgttt gacaatgctg atgcggatat tgacttttag acacattatt 7860 agccaccttt agttggagcg ttcaggcact agacctgtaa tgtgttgata tatataattt 7920 atgcttgcaa taaatagatg taatgttagt ttttgtgagt gttgaacccc atgtatttgt 7980 atgtggttat aactagtttt tagggaaact agtttgttaa tgtttacccc cccccccccc 8040 ccccccctat 8050 //