ID   JX131286; SV 1; circular; genomic DNA; STD; VRL; 2771 BP.
XX
AC   JX131286;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   26-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Tomato yellow leaf curl virus, complete genome.
XX
KW   .
XX
OS   Tomato yellow leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2771
RA   Anfoka G.H., Haj Ahmad F.W., Adwan H.J., Abu Mallouh S.A., Al-Taleb M.M.,
RA   Odeh W.H.;
RT   "Sinapis arvensis is a natural host of five begomoviruses in Jordan";
RL   Unpublished.
XX
RN   [2]
RP   1-2771
RA   Anfoka G.H., Haj Ahmad F.W., Al-Taleb M.M.;
RT   ;
RL   Submitted (03-JUN-2012) to the INSDC.
RL   Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa'
RL   Applied University, Al-Salt 19117, Jordan
XX
DR   MD5; dca432fb9b3578ce8ad5998d52dddbb1.
DR   EuropePMC; PMC5796946; 29430354.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLC Main Workbench v. 6.6.2
CC   Coverage              :: Complete
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2771
FT                   /organism="Tomato yellow leaf curl virus"
FT                   /mol_type="genomic DNA"
FT                   /country="Jordan"
FT                   /isolation_source="Sinapis arvensis"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:10832"
FT   CDS             305..1081
FT                   /codon_start=1
FT                   /product="V1"
FT                   /db_xref="GOA:J7HKM6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:J7HKM6"
FT                   /protein_id="AFQ00073.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIEHTGVVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   CDS             complement(1078..1482)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:J7HGW7"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:J7HGW7"
FT                   /protein_id="AFQ00074.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLLNHDI
FT                   ISIQVRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVFKYLDSLGVISINN
FT                   VIRSVDHVLYDVLEKTINVTETHDIKYKFY"
FT   CDS             complement(1223..1630)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:J7HDV7"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:J7HDV7"
FT                   /protein_id="AFQ00075.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISTEPRHHFHSGKIQPQ
FT                   HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1539..2612)
FT                   /codon_start=1
FT                   /product="C1"
FT                   /db_xref="GOA:J7HK29"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7HK29"
FT                   /protein_id="AFQ00076.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT                   REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAVKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVMSSAARPWRPIGIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   CDS             complement(2168..2461)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:J7HDQ6"
FT                   /protein_id="AFQ00077.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ
FT                   QMSRPTWKKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ   Sequence 2771 BP; 756 A; 528 C; 603 G; 884 T; 0 other;
     accggatggc cgcgcctctt ccttttatgt ggtccccacg agggttacac agacgtcact        60
     gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact       120
     tggtccccaa gtatttgtct tgcaatatgt gggacccact tctaaatgaa tttcctgaat       180
     ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt gagaaactta       240
     cgagcccaat acattgggcc acgatttaat agggatctta tatctgttgt aagggcccgt       300
     gactatgtcg aagcgaccag gcgatataat catttccacg cccgtctcga aggttcgccg       360
     aaggctgaac ttcgacagcc catacagcaa ccgtgctgct gtccccattg tccaaggcac       420
     aaacaagcga cgatcatgga cgtacaggcc catgtaccga aagcccagaa tatacagaat       480
     gtatcgaagc cctgatgttc ctcgtggatg tgaaggccca tgtaaagtcc agtcttatga       540
     gcagcgggat gatattgagc acactggtgt tgttcgttgt gttagtgatg ttactcgtgg       600
     atctggaatt actcacagag tcggtaagag gttctgtgtt aaatcgatat attttttagg       660
     taaagtctgg atggatgaaa atatcaagaa gcagaatcac actaatcagg tcatgttctt       720
     tttggtccgt gatagaaggc cctatggaag cagtccaatg gattttggac aggtttttaa       780
     tatgtttgat aatgagccca gtaccgcaac tgtgaagaat gatttgcgtg ataggtttca       840
     agtgatgagg aaatttcatg ctacagttat tggtgggccc tctggaatga aggaacaggc       900
     attagttaag agatttttta aaattaacag tcatgtaact tataatcatc aggaggcagc       960
     caagtacgag aaccatactg aaaatgcctt gttattgtat atggcatgta cgcatgcctc      1020
     taatccagtg tatgcaacta tgaaaatacg catctatttc tatgattcaa tatcaaatta      1080
     ataaaattta tattttatat catgagtttc tgttacattt attgtttttt caagtacatc      1140
     atacaataca tgatcaactg atctgattac attgttaatg gaaattacac caagactatc      1200
     taagtactta aaaacttcat atctaaatac tcttaagaaa tgaccagtct gaggctgtaa      1260
     tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc cccattacct tcctgatgtt      1320
     gtggttgaat cttacctgaa tggaaatgat gtcgtggttc agtagaaatg gcctctggct      1380
     gtgttctgtt atcttgaaat agaggggatt gtttatctcc cagataaaaa cgccattctc      1440
     tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattattg caattgaggt      1500
     ggaggtagta tgagcagcca cagtctaggt ctacacgctt acgccttatt ggtttcttct      1560
     tggctatctt gtgttggacc ttgattgata cttgcgaaca gtggctcgta gagggtgacg      1620
     aaggttgcat tcttgagagc ccaatttttc aaggatatgt ttttttcttc gtctagatat      1680
     tccctatatg aggaggtagg tcctggattg cagaggaaga tagtgggaat tcccccttta      1740
     atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc ccccatgaat      1800
     tccttgaagt gctttaaata atgtgggtct acgtcatcaa tgacgttgta ccacgcatca      1860
     ttactgtaca cctttgggct taggtctaga tgtccacata aataattatg tgggcctaga      1920
     gacctggccc acattgtttt gcctgttcta ctatcaccct caatgacaat acctatgggt      1980
     ctccatggcc gcgcagcgga agacatgacg ttctcggcga cccactcttc aagttcatct      2040
     ggaacttgat taaaagaaga agaaagaaat ggagaaacat aaacttctaa aggaggacta      2100
     aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc ctttggggcc      2160
     ttctctttta atatattgag ggcctcggat ttactgcctg aattgagtgc ttcggcatat      2220
     gcgtcgttgg cagattgctg acctcctcta gctgatctgc catcgatttg gaaaactcca      2280
     aaatcaatga agtctccgtc tttttccacg taggtcttga catctgttga gctcttaact      2340
     gcctgaatgt ttggatggaa atgtgctgac ctgtttgggg ataccaggtc gaagaaccgt      2400
     tggttcttac attggtattt gccttcgaat tggataagca catggagatg tggttcccca      2460
     ttctcgtgga attctctgca aactttgatg tattttttat ttgttggggt ttctaggttt      2520
     tttaattggg aaagtgcttc ctctttagag agagaacaat tgggatatgt taggaaataa      2580
     ttcttggcat atattttaaa taaacgaggc atgttgaaat gaatcggtgt ccctcaaagc      2640
     tctatggcaa tcggtgtatt ggtgtcttat ttatacctgg acacctaatg gttatttggt      2700
     aatttcataa atgttcattg caattcaaaa ttcaaaaatc aaatcattaa agcggtcatc      2760
     cgtataatat t                                                           2771
//