ID JX131285; SV 1; circular; genomic DNA; STD; VRL; 2776 BP. XX AC JX131285; XX DT 26-AUG-2012 (Rel. 113, Created) DT 26-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Tomato yellow leaf curl Sardinia virus, complete genome. XX KW . XX OS Tomato yellow leaf curl Sardinia virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2776 RA Anfoka G.H., Haj Ahmad F.W., Adwan H.J., Abu Mallouh S.A., Al-Taleb M.M., RA Odeh W.H.; RT "Sinapis arvensis is a natural host of five begomoviruses in Jordan"; RL Unpublished. XX RN [2] RP 1-2776 RA Anfoka G.H., Haj Ahmad F.W., Al-Taleb M.M.; RT ; RL Submitted (03-JUN-2012) to the INSDC. RL Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa' RL Applied University, Al-Salt 19117, Jordan XX DR MD5; bfc6e057b722d90230235567600d427e. DR EuropePMC; PMC6362282; 30718735. XX CC ##Assembly-Data-START## CC Assembly Method :: CLC Main Workbench v. 6.6.2 CC Coverage :: Complete CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2776 FT /organism="Tomato yellow leaf curl Sardinia virus" FT /mol_type="genomic DNA" FT /country="Jordan" FT /isolation_source="Sinapis arvensis" FT /collection_date="2011" FT /db_xref="taxon:123735" FT CDS 140..382 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:J7HDP9" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:J7HDP9" FT /protein_id="AFQ00067.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNARLEGSSKTELRQPV" FT CDS 300..1076 FT /codon_start=1 FT /product="V1" FT /db_xref="GOA:J7HKM4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:J7HKM4" FT /protein_id="AFQ00068.1" FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYNSRCCCPHCPRHQASNHG FT LTGLMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGYGITH FT RVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN FT EPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1073..1477) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:J7HGW5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J7HGW5" FT /protein_id="AFQ00069.1" FT /translation="MDLRTGEYITAHQATSGVYTFGITNPLYFTITRHNQNPFNNKYNT FT LTFQIRFNHNLRKELGIHKCFLNFHIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNN FT VVRAVDYVLFHVFERTIDVTENHEIKFNFY" FT CDS complement(1218..1625) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:J7HDV2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J7HDV2" FT /protein_id="AFQ00070.1" FT /translation="MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQSEPIQQQIQHTNIPNQIQPQ FT LEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL" FT CDS complement(1534..2613) FT /codon_start=1 FT /product="C1" FT /db_xref="GOA:J7HK25" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7HK25" FT /protein_id="AFQ00071.1" FT /translation="MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIK FT ICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFH FT NINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGD FT SRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWATKNAIFVTIHQPL FT FADTNQNTTSHRQEEASEA" FT CDS complement(2166..2462) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:J7HDQ3" FT /protein_id="AFQ00072.1" FT /translation="MKMGNLISIFSSNSKENTIVPINDSSTWYPQPGQHISIRTFRELN FT RAPTSSPISTRTEMFLNGVLSRSTDDLLGEDNRQPTTLTQRQLTQEVSRRLLM" XX SQ Sequence 2776 BP; 767 A; 518 C; 609 G; 882 T; 0 other; accggatggc cgcgctcccc gataaagaag tgggtcctac gcagtagttt ctgtcgacca 60 atgaaattgc agcctcaaag cttaaataac tgttcagctg tgttataaac ttgctcccta 120 agtttaaaaa atatacaaaa tgtgggatcc attattaaat gaatttcctg attcagtcca 180 tggtctccga tgcatgctcg caattaaata tttgcagcta gttgaagaaa cctacgaacc 240 taataccctt ggtcacgact taattaggga tctcatctcc gtcattcgtg ctcgtgacta 300 tgccgaagcg aaccggcgat atactaattt caacgcccgt ctcgaaggtt cgtcgaagac 360 tgaacttcga cagcccgtat aacagccggt gctgctgccc ccactgtcca aggcatcaag 420 cgtcgaatca tggacttaca ggcctcatgt atcgaaagcc gcggatgtac agaatgtaca 480 gaagccctga tgtacctccg ggttgtgaag gtccctgtaa agtgcagtcg tacgagcagc 540 gtgatgacgt caagcatacc ggtgttgtgc gttgtgttag tgatgtaact aggggttatg 600 gtattactca tagagttggt aaacgttttt gtatcaagtc aatttatata ttaggaaaga 660 tttggatgga tgaaaacata aaaaaacaaa atcatactaa ccaagtgatg tttttccttg 720 ttcgagaccg aaggccttat ggaactagtc ctatggattt tggtcaagtt tttaacatgt 780 ttgataatga acccagtact gctacggtga agaacgactt acgggatagg tatcaagtaa 840 tgaggaagtt tcatgctacg gttgttggag gtccgtcagg gatgaaggag cagtgtttgc 900 tgaagagatt ttttaaaatt aatacccatg tagtttataa tcaccaagag caggcgaagt 960 atgaaaatca tactgagaat gccttgttat tgtatatggc ttgtactcat gcttctaacc 1020 cagtgtacgc tacgttgaaa atacgtattt atttttatga tgctgtaaca aattaataaa 1080 aattaaattt tatttcatga ttttcagtta catcaattgt tctttcaaat acatgaaaca 1140 atacataatc aactgctcta acaacattat ttaaagaaat tacacccaaa ttattcaaat 1200 atttacagac ttgatattta aagactctta aaaaatgacc agtcggagac tgtaaggtcg 1260 tccagatgtg gaagttgaga aaacatttgt gaatccccag ttccttcctc aagttgtggt 1320 tgaatctgat ttggaatgtt agtgtgttgt atttgttgtt gaatgggttc tgattgtgtc 1380 tggttatcgt gaaatatagg ggatttgtta tcccgaaggt ataaacgcca ctcgttgctt 1440 gatgcgcagt gatgtactcc cctgtgcgta aatccatgat ttatgcagtc taagtgtatg 1500 taataagagc agccacagtc cagatctacc cttctacgcc tcacttgcct cttcttggcg 1560 atgtgatgtt gtattttgat tggtatctgc gaacaatggc tggtggatgg tgacgaagat 1620 tgcattctta gtagcccagt tttttaatgc ttgatttttt tcttcgtcga gatattcttt 1680 aaatgatgat tgtgggcctg gattgcatag gaagatagtg ggaatgcctc ctttaatttg 1740 aatgggcttg ccatactttg tgttgctttg ccaatctctt tgggccccca taaattcttt 1800 aaagtgtttt aaataatgcg ggtcgacgtc atcaatgacg ttataccaag cattattgct 1860 gtatactttt tgactgaggt caagatggcc gcacaaataa ttatgtgggc ctaatgaacg 1920 ggcccacgtt gtctttcctg tccggctgtc accctcaatc actatactca ccggtctcca 1980 aggccgcgca gcggcatcca tgacgttctc ggaaacccag tgttcaagtt catcaggaac 2040 ttgatcgaaa gaagaagata aaaaaggaga aacataaggt gccggaggca cctggaaaac 2100 cttatctaaa ttactattta tattatgaaa atgtagaacg taatctctag gcgctaattc 2160 tttaattaca tcaagagcct gcgacttact tcctgcgtta attgcctttg cgtaagcgtc 2220 gttggctgtc tgttgtcctc ccctagcaga tcgtccgtcg atctggaaag taccccattc 2280 aagaacatct ccgtccttgt cgatatagga cttgacgtcg gagctcgatt tagctccctg 2340 aatgttcgga tggaaatgtg ctgacctggt tggggatacc aggtcgaaga atcgttgatt 2400 ggtacaattg tattttcctt cgaattggat gagaatatgg agatgaggtt ccccattttc 2460 atgtagttct ctgcaaattt tgatgaataa tttgtttgtg ggtgtttgta ggtttgttat 2520 ttgggaaagt gcattttctt ttgttaaatc acatttggga tatgtaagga aataattttt 2580 agccttgata ctaaaacgac ctgatcttgg catttttgct gtcgttctga atcgggggac 2640 actcaaagta tccagcaatt gggggaattg gggggcaata tatatgatgc cccctaaatg 2700 gcatagatgt aattattcaa agtaataaat ttatttttta attttttttt ggtaaagcgg 2760 ccatccgtat aatatt 2776 //