ID   JX131281; SV 1; circular; genomic DNA; STD; VRL; 2634 BP.
XX
AC   JX131281;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   26-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Squash leaf curl virus segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Squash leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2634
RA   Anfoka G.H., Haj Ahmad F.W., Adwan H.J., Abu Mallouh S.A., Al-Taleb M.M.,
RA   Odeh W.H.;
RT   "Sinapis arvensis is a natural host of five begomoviruses in Jordan";
RL   Unpublished.
XX
RN   [2]
RP   1-2634
RA   Anfoka G.H., Haj Ahmad F.W., Al-Taleb M.M.;
RT   ;
RL   Submitted (03-JUN-2012) to the INSDC.
RL   Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa'
RL   Applied University, Al-Salt 19117, Jordan
XX
DR   MD5; cd00c770a36fe4e24f9a316063facb39.
XX
CC   GenBank Accession Numbers JX131281-JX131282 represent the complete
CC   genome of Squash leaf curl virus.
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLC Main Workbench v. 6.6.2
CC   Coverage              :: complete
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2634
FT                   /organism="Squash leaf curl virus"
FT                   /segment="DNA-A"
FT                   /mol_type="genomic DNA"
FT                   /country="Jordan"
FT                   /isolation_source="Sinapis arvensis"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:10829"
FT   CDS             212..967
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /db_xref="GOA:J7HK10"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:J7HK10"
FT                   /protein_id="AFQ00051.1"
FT                   /translation="MVKRDAPWRLMAGTSKVSRSANFSPRGGMGPRFNKAAAWVNRPMY
FT                   RKPRIYRTMRGPDIPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATI
FT                   KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(964..1368)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /db_xref="GOA:Q2XNB5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q2XNB5"
FT                   /protein_id="AFQ00052.1"
FT                   /translation="MVMDLRTWDDITVHQAENSVFIWEVPNPLYFKMYNVEDPLYTHTR
FT                   IYHIQIRFNHNLRRALNLHKAFLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVIGL
FT                   NNVIRAVSWATDRSYVNYVLENHEIKFKIY"
FT   CDS             complement(1109..1633)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /db_xref="GOA:J7HKL5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:J7HKL5"
FT                   /protein_id="AFQ00053.1"
FT                   /translation="MESRFKLKVESHQSCCAILERGPVIKISSTKPRTRHYESGLKKMP
FT                   NSSSSKVPSIKAQHRIAKKRAVRRRRIDLDCGCSIYIHINCAKDGNGFTHMGRHHCASG
FT                   REFRFYLGGSKSPLFQDVQRGGSTLHAHKDIPHSNPVQPQPEESTKSSQSVPELPSLDG
FT                   IDSSFWDDIFE"
FT   CDS             complement(1446..2489)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /db_xref="GOA:J7HGV7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7HGV7"
FT                   /protein_id="AFQ00054.1"
FT                   /translation="MPRNPNSFRLTARNIFLTYPRCDVPKEEVLEMLLHLSWSVVKPNY
FT                   IRVAREEHSDGSPHLHCLIQLSGKSNIKDAGFFDLTHPRRSARFHPNIQSAKDTNAVKN
FT                   YITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNAGSAGEALEIIKAGDPKTFIVNYHNL
FT                   LANVERLFQKPPEPWVPPFEISSFTSVPEELQDWADDYFNECSAARPRPTSIIEGGSRT
FT                   GKTMWARSLGPHNYLSGHLDFNSRVFSNDVKYNVIDDIAPHYLKLKHWKELIGAQRDWQ
FT                   SNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENSALREWTEKNAKFIFLEGPLY
FT                   QSTAQDC"
FT   CDS             complement(2045..2422)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /db_xref="UniProtKB/TrEMBL:J7HDU1"
FT                   /protein_id="AFQ00055.1"
FT                   /translation="MFPKKKFLRCFCISRGQSSNRITLESPERNIPTGLRTYTASFNYL
FT                   ENPTSRMLDFSTSLTPDGLPDFTRTFSLPKTPTPSRTTSPKKVIIVNPGNIKCLGVQSR
FT                   TKTTYITTPSMQVVREKLSKL"
XX
SQ   Sequence 2634 BP; 704 A; 580 C; 595 G; 755 T; 0 other;
     accggatggc cgcccgtttt tggtgtcctc tactttagcc cacggggcag gcccaggccc        60
     aaatcaacca caaccttttt tattttatgg gaccacatta attattgcaa ccaaccacgt       120
     tgcgcctgac gagtctacat aataatgact tggtgactaa atgtggtccc tataaataaa       180
     gctgacatat cccatacctc tttaattcaa aatggtaaag agagatgccc catggcgttt       240
     aatggcgggg acctcaaagg tctcacgctc tgctaacttt tcgcctcgtg gaggtatggg       300
     cccaagattc aacaaggccg ctgcatgggt taacaggccc atgtacagga agcccaggat       360
     ctatcgcaca atgagaggcc cagacatccc caagggatgt gaagggccat gcaaggttca       420
     gtcttacgag cagcggcatg atatctccca tcttggcaag gtaatgtgta tttcggacgt       480
     gacgcgtggt aatggcatta ctcaccgcgt cggcaagcgc ttttgtgtta agtctgtata       540
     tattttaggc aagatatgga tggacgaaaa tatcaagttg aagaatcaca cgaacagtgt       600
     gattttttgg ttagttcgag atcgtagacc atatggcact ccgatggatt tcggccaggt       660
     gttcaacatg tttgacaacg agcccagcac ggcaactatc aagaacgatc tacgtgatcg       720
     ttatcaagtc atgcacaggt tctacgcgaa ggtcactggt ggtcagtatg ctagcaacga       780
     acaagccttg gttaggcgtt tctggaaggt caacaactat gttgtgtata atcaccagga       840
     agccgcgaaa tacgagaatc atacggagaa cgctttgtta ttgtatatgg catgtactca       900
     tgcctctaac cctgtatatg cgacattgaa aattcggatc tatttttatg attcgataac       960
     aaattaataa attttgaatt ttatttcatg attctcgagt acataattta catatgaacg      1020
     gtctgttgcc caagatacag ctcgtataac gttattgaga ccaataactc ctaacctatc      1080
     taagtacaac ataactaagt gcctaaatct attcaaatat gtcgtcccag aagctcgaat      1140
     cgattccgtc cagacttgga agttcaggaa cgctttgtga agatttagtg ctctcctcag      1200
     gttgtggttg aaccggattt gaatgtggta tatccttgtg tgcgtgtaga gtggatcctc      1260
     cacgttgtac atcttgaaat agaggggatt tggaacctcc caaataaaaa cggaattctc      1320
     tgcctgatgc acagtgatgt cgtcccatgt gcgtaaatcc attaccatct ttggcgcagt      1380
     ttatatgtat gtatatggaa cagccacagt ctaagtcgat tcttcgacga cgaacagctc      1440
     tttttttagc aatcctgtgc tgtgctttga tagaggggac cttcgaggaa gatgaatttg      1500
     gcattttttt cagtccactc tcgtagtgcc gagttctcgg ctttgtcgag gaaatcttta      1560
     taactggacc cctctccagg attgcacagc acgattgatg ggattccacc tttaatttga      1620
     accggctttc catatttaca gttggactgc cagtcccttt gggccccaat caattccttc      1680
     cagtgcttta gcttaaggta atgcggagcg atgtcatcaa tgacgttata cttgacgtca      1740
     tttgagaaaa ccctagaatt gaaatcaaga tggccgctca agtaattatg tgggcctaat      1800
     gacctagccc acattgtctt gcccgttctt gaaccacctt ctattatact agttggcctt      1860
     ggccgcgcag cggaacactc attaaaataa tcatcagccc aatcttgtaa ctcttctgga      1920
     actgacgtga acgaagagat ctcaaacgga ggaacccatg gttccggagg tttctgaaat      1980
     aatctctcga cgttagctaa taaattatga taattaacga taaacgtctt tggatcacca      2040
     gcttttataa tttcgagagc ttctcccgca ctacctgcat tgacggcgtt gtgatatacg      2100
     tcgtctttgt tcgactttga acccccagac actttatatt gcccggattc acaataatca      2160
     ccttctttgg tgatgtagtt cttgacggcg ttggtgtctt tggcagactg aatgttcggg      2220
     tgaaatcggg cagaccgtct ggggtgagtg aggtcgaaaa atccagcatc cttgatgttg      2280
     gattttccag ataattgaat gaggcagtgt aagtgcggag acccgtcgga atgttcctct      2340
     ctggcgactc taatgtaatt cggtttgacg actgaccacg agagatgcag aagcatctca      2400
     agaacttctt ctttgggaac atcgcacctt ggataagtta agaatatatt tctggcagtt      2460
     aaacgaaagg aattagggtt tcgtggcata tttcgtaaat atgcgtcggg acaccaggag      2520
     gtgtcctctc aactttctca tattgctggt gtcctggtgt cctatatata cctcaagaca      2580
     cataaagcct ctaggggaca ccaaggggca aaatcggcca tccgcaataa tatt            2634
//