ID JX123318; SV 1; linear; genomic RNA; STD; VRL; 4145 BP. XX AC JX123318; XX DT 16-AUG-2012 (Rel. 113, Created) DT 17-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Papaya lethal yellowing virus isolate 26, complete genome. XX KW . XX OS Papaya lethal yellowing virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4145 RX DOI; 10.1007/s00705-012-1384-x. RX PUBMED; 22743825. RA Pereira A.J., Alfenas-Zerbini P., Cascardo R.S., Andrade E.C., RA Murilo Zerbini F.; RT "Analysis of the full-length genome sequence of papaya lethal yellowing RT virus (PLYV), determined by deep sequencing, confirms its classification in RT the genus Sobemovirus"; RL Arch. Virol. 157(10):2009-2011(2012). XX RN [2] RP 1-4145 RA Pereira A.J., Alfenas-Zerbini P., Cascardo R.S., Andrade E.C., RA Zerbini F.M.; RT ; RL Submitted (31-MAY-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 559b64a3d1782dc49888bfc085f9c4ac. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4145 FT /organism="Papaya lethal yellowing virus" FT /host="Carica papaya" FT /isolate="26" FT /mol_type="genomic RNA" FT /country="Brazil" FT /collection_date="Oct-2009" FT /db_xref="taxon:685899" FT gene 50..559 FT /gene="p1" FT CDS 50..559 FT /codon_start=1 FT /gene="p1" FT /product="putative suppressor of RNA silencing" FT /db_xref="UniProtKB/TrEMBL:J7G568" FT /protein_id="AFP67699.1" FT /translation="MSVVIEVYDEQSVSKVLIESFKLWPKKLGDCVIQLKGKYDSSAVC FT RGEITLCCEKCRRQEIISFEKKRILIHCDWENKLCEDPCIDRFVKPDEGFCNWCVEDHQ FT CTSEGCSDPDCVFHSDSLEFGWSESLNKWIDAHKHGFVFDRYEAEWYHPITAEILLSRS FT PGLFRD" FT gene 562..3566 FT /gene="p2b" FT CDS join(562..1746,1746..3566) FT /codon_start=1 FT /ribosomal_slippage FT /gene="p2b" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:J7GBL4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7GBL4" FT /protein_id="AFP67700.1" FT /translation="MTFIDFLLVCLVWNVGALLVTQNTNWLPTWTVPLAVIIQLALICI FT CMLLLSVLYVWRWLTLRSIKVDSANYHQTYAEVIGCRLVPEKGLVMDILDGEKLTPVLV FT NPNYWHLLPDCAISNKYGTECPVMGVSLSHVAPGKEPSSLVAISNGSEIIGFGSRVKFN FT GVTYLLTANHVWNGRYTALKIVKGSQEVSVDASMYTAKYFCEDLRVDFAMVPIPEPIWT FT KLGVKASNLSTMSRTSLINVYGGADPTKLKCSSAKAVKAEYSHQIVHYATTGGGWSGTP FT LYYNGAVVGMHTGSIKLGESNRGVNVAMLLNLACETVFSEITYTEIDSDLALDRDYGFI FT EVEIHGKGKFALGKGEWYAVDEFVRNKRLRGEKLWADMAEEDEPEELELYHDTIENCFA FT KSFKRGWGGVGQTISALIYFGGYEWTQGMCIRCSGRCNCYSKGGMPLTYVGRSGVKFRE FT TGRSPIDQRVTNALKHLPELSEFGWPERGSEAELKSLKIQAERFRQTGSPEGLEEACRR FT LKDRYPPARPRRCLRGEWDERETATEVAKICESSVNQRASPGVPLSVFGSSNGAVLDKH FT RDLVVTAVVARLNLLSEKIIDYDPVQLVQFGYCDPVRLFVKQEPHSLKKITEGRFRLIS FT SVSLVDQLVERMIFGPQNELEITRWRNIPSKPGMGLSLEEQAQTIWSDLSYKHLKHPAA FT EADISGFDWSVQDWELWADLKMRIELGNMEGRLKIAAINRFTCFMNSVFQLSDGSLIAQ FT GKPGLMKSGSYCTSSTNSRIRCLMAELIGAPWCIAMGDDSVEGYVPNARRKYEELGHVC FT KDYMPCKVDSEGNLEKVNFCSHELSEGKFWLTSWPKTVFRYLNSKAPEIGDLKAELWGN FT PHWGRIYEVVGVEDRANKILELNDFSRSSEAANYQECCSGGSESCRSTGSACSTGSAER FT YECETTEGLAEEDASKYSECTDQTGHRTYCKECAGDTGYAYSAFKELCDWYNSYGVQPA FT CVSESYPHGYGG" FT gene 562..2247 FT /gene="p2a" FT CDS 562..2247 FT /codon_start=1 FT /gene="p2a" FT /product="serine protease" FT /note="VPg" FT /db_xref="GOA:J7G6A6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:J7G6A6" FT /protein_id="AFP67701.1" FT /translation="MTFIDFLLVCLVWNVGALLVTQNTNWLPTWTVPLAVIIQLALICI FT CMLLLSVLYVWRWLTLRSIKVDSANYHQTYAEVIGCRLVPEKGLVMDILDGEKLTPVLV FT NPNYWHLLPDCAISNKYGTECPVMGVSLSHVAPGKEPSSLVAISNGSEIIGFGSRVKFN FT GVTYLLTANHVWNGRYTALKIVKGSQEVSVDASMYTAKYFCEDLRVDFAMVPIPEPIWT FT KLGVKASNLSTMSRTSLINVYGGADPTKLKCSSAKAVKAEYSHQIVHYATTGGGWSGTP FT LYYNGAVVGMHTGSIKLGESNRGVNVAMLLNLACETVFSEITYTEIDSDLALDRDYGFI FT EVEIHGKGKFALGKGEWYAVDEFVRNKRLRGEKLWADMAEEDEPEELELYHDTIETVLP FT SPLNVDGAESVKRSPPSSILAGTSGPKECVLGAPEGATATPKVGCLLPTLADRVLNLER FT LVEVLLTKESQMPSNTSQNSPSLVGRKEALKQSSNRSKSKPKGLDKPVVRKDSKKPVEG FT SKTGIHQPDQGDASEGSGMNAKQRRKLRRSAKAVSTSVHPPVSH" FT gene 3241..4077 FT /gene="cp" FT CDS 3241..4077 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:J7GE58" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:J7GE58" FT /protein_id="AFP67702.1" FT /translation="MISAGRVRRQTIKNAARAAAKVAVQQAQRVQQVAPKGMNAKQRRA FT LRRKMLQSTASVQTRQVTAPTAKSVQVIRAMPTLRSRNSVTGITHMEYNQPVSVKATPT FT VTVDNCMPYTVGTWLRGVASNWSKWRWRKLRFYYLPSCATTTPGSVHMGLTYDQYDTVP FT TNATEMCNLQGYTTGPVWSGAEASTALQNANVMCPPGAICCEVDVTRFTQAWYNYITSV FT SFTSATTVNVAIGNMYSPVRLVCLTDEGPATAVNAGKILVQYEIELIEPVTSALNL" XX SQ Sequence 4145 BP; 1118 A; 830 C; 1110 G; 1087 T; 0 other; acaaagttgg ttttgtaaga aattgtattt tccaacttgt taaacctaca tgtctgtggt 60 gattgaagtc tatgacgaac aatcagtaag caaagttttg atcgaaagtt tcaagctttg 120 gcctaagaaa ttaggtgatt gtgtcatcca gttgaaaggt aagtacgact cttccgcagt 180 ttgcagaggt gaaataaccc tttgttgtga gaagtgtagg cgtcaagaga taatctcttt 240 tgaaaagaag agaatcctga tacattgtga ttgggagaat aagctctgtg aggacccttg 300 tatagaccga tttgtgaaac ctgacgaagg tttctgcaac tggtgcgtgg aagatcatca 360 gtgcacctcc gagggttgtt cagatcccga ctgtgtgttt cactcagatt ccttggaatt 420 tgggtggtct gaatcactga ataagtggat agacgcacat aaacacgggt tcgtgtttga 480 ccgttacgag gccgagtggt accacccgat tacagccgaa atattgctgt ctaggagtcc 540 aggtctcttc agagattgaa gatgacgttt atagatttcc tgctagtgtg tctagtatgg 600 aatgtggggg ctttactggt aactcaaaat accaactggc ttcctacgtg gactgtaccc 660 cttgctgtga taatccagct ggctttgatc tgcatttgta tgctgttgct gagcgtgctg 720 tacgtttggc gatggttgac tttgaggtca ataaaagtag atagtgcaaa ctatcaccag 780 acctatgctg aggttatagg ctgtcggcta gtccctgaga agggtttagt gatggatatc 840 ttagatggtg agaagttgac acccgtcctg gtgaacccaa actactggca tttgcttcct 900 gactgtgcga tatctaacaa gtatggaact gagtgcccag ttatgggggt ttccttatcc 960 catgtagctc ctgggaagga gccaagttct ttggtagcaa tatcaaatgg cagtgaaatc 1020 ataggattcg gatcccgggt taagtttaat ggagtcactt atctattgac agctaatcat 1080 gtctggaatg gccgttatac ggctcttaaa atagtgaagg gatctcagga ggtctcagta 1140 gatgcttcta tgtatactgc aaagtatttc tgtgaggatc tacgggttga cttcgcaatg 1200 gtgcccatac cagagccaat ctggaccaag ttgggcgtta aagcgagtaa tctgtctaca 1260 atgtcccgca catcgctgat aaatgtgtat ggaggggcag atccaacgaa gctgaaatgc 1320 tcgtcagcga aagctgtgaa ggcagagtac tcccaccaaa ttgtgcatta tgctactacc 1380 ggcggaggct ggagtggtac ccccttatac tataatggag cggttgtagg aatgcatacc 1440 ggttctatca agttggggga gagcaataga ggagtcaatg tagccatgtt gctaaacttg 1500 gcttgcgaga ctgtattcag tgaaataacg tacactgaga ttgattctga cttagccctc 1560 gatagggatt atggcttcat tgaagtcgaa atccacggca aggggaagtt tgccctggga 1620 aagggtgaat ggtacgctgt cgacgagttt gtgcggaaca agcggctacg cggtgagaaa 1680 ctgtgggctg atatggctga ggaagatgaa cccgaagaac tagaactcta ccatgatact 1740 attgaaactg ttttgccaag tcctttaaac gtggatgggg cggagtcggt caaacgatct 1800 ccgccctcat ctattttggc gggtacgagt ggacccaagg aatgtgtatt aggtgctccg 1860 gaaggtgcaa ctgctactcc aaaggtggga tgcctcttac ctacgttggc agatcgggtg 1920 ttaaatttag agagactggt agaagtccta ttgaccaaag agtcacaaat gccctcaaac 1980 acctcccaga actctccgag tttggttggc cggaaagagg ctctgaagca gagctcaaat 2040 cgctcaaaat ccaagccgaa aggtttagac aaaccggtag tccggaagga ctcgaagaag 2100 cctgtagaag gctcaaagac cggtatccac cagccagacc aaggagatgc ctccgagggg 2160 agtgggatga acgcgaaaca gcgacggaag ttgcgaagat ctgcgaaagc agtgtcaacc 2220 agcgtgcatc ccccggtgtc ccattgagcg tgttcggctc cagcaatgga gctgttctag 2280 ataagcatag agatctagtc gttacagccg ttgtggccag actaaattta ttatctgaaa 2340 agataattga ttatgatcca gttcaactgg tgcagtttgg ctattgtgat ccagtgagat 2400 tgtttgtaaa gcaagaacct cattctctga agaagataac tgaggggcgt ttccgtttga 2460 tctcttccgt gtctctggtg gaccaactcg ttgaaagaat gatatttgga ccccagaatg 2520 aacttgagat aactaggtgg cgaaatatcc catccaagcc cggaatgggg ttgtctctgg 2580 aggagcaagc ccagacaatt tggtctgatt tgagctacaa acatctgaaa caccccgctg 2640 ctgaagcgga tatctctgga tttgactggt ctgttcaaga ctgggaactt tgggctgatc 2700 tcaaaatgcg aatcgaatta gggaacatgg agggtaggtt aaagattgct gcaatcaata 2760 gattcacatg cttcatgaac tcggttttcc agctttctga cggaagtttg atagcacaag 2820 ggaaaccagg actgatgaag tccggaagct attgcacttc aagtacaaat tctcgtataa 2880 ggtgtctgat ggctgagtta attggggctc cctggtgtat agcaatgggt gatgactcgg 2940 ttgaaggtta tgtcccaaac gctcgtagga aatatgagga attgggtcat gtctgcaaag 3000 actacatgcc ttgtaaggtc gattcagagg ggaacctgga aaaggttaac ttctgctccc 3060 acgagctgtc tgaagggaag ttttggctga caagttggcc aaaaacggta tttaggtatc 3120 tcaactccaa ggctcctgag ataggagact tgaaggcaga gttgtggggg aaccctcact 3180 ggggaagaat ctatgaagtt gttggtgttg aagaccgggc caacaaaatt ttagaattaa 3240 atgatttcag ccggtcgagt gaggcggcaa actatcaaga atgctgctcg ggcggcagcg 3300 aaagttgccg ttcaacaggc tcagcgtgtt caacaggtag cgccgaaagg tatgaatgcg 3360 aaacaacgga gggccttgcg gaggaagatg cttcaaagta cagcgagtgt acagaccaga 3420 caggtcaccg cacctactgc aaagagtgtg caggtgatac gggctatgcc tactctgcgt 3480 tcaaggaact ctgtgactgg tataactcat atggagtaca accagcctgt gtcagtgaaa 3540 gctaccccca cggttacggt ggataactgt atgccatata cagtgggaac atggttacga 3600 ggagtggcct ccaactggtc gaaatggaga tggaggaagt tacggttcta ttatctacca 3660 tcttgtgcta ccacaacccc gggatctgtg catatggggt taacgtatga tcagtatgat 3720 actgtaccga caaacgccac agaaatgtgt aatctacaag gatatactac tggtcccgtt 3780 tggtctggag cggaagcatc gacggcattg caaaatgcta atgtgatgtg ccctccagga 3840 gctatctgct gcgaagttga tgtgacgaga ttcactcaag cgtggtataa ttatatcacg 3900 tcagttagct ttacttctgc cactacagtt aatgtagcta tcgggaatat gtattctcct 3960 gttagattag tttgtttgac ggatgaggga cctgctactg cggtcaacgc tggtaagatc 4020 ttggtacaat acgagattga gctaattgaa ccagttacat ctgctctaaa cctataatgg 4080 aattgaggtt ggcatctcga ttaccttttc acaatgcccg gttccttggg tccactcgta 4140 cccgc 4145 //