ID   JX122965; SV 1; circular; genomic DNA; STD; VRL; 2623 BP.
XX
AC   JX122965;
XX
DT   19-AUG-2012 (Rel. 113, Created)
DT   29-JAN-2013 (Rel. 115, Last updated, Version 3)
XX
DE   Soybean chlorotic spot virus DNA-A, complete sequence.
XX
KW   .
XX
OS   Soybean chlorotic spot virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2623
RX   DOI; 10.1007/s00705-012-1499-0.
RX   PUBMED; 23053525.
RA   Coco D., Calil I.P., Brustolini O.J., Santos A.A., Inoue-Nagata A.K.,
RA   Fontes E.P.;
RT   "Soybean chlorotic spot virus, a novel begomovirus infecting soybean in
RT   Brazil";
RL   Arch. Virol. 158(2):457-462(2013).
XX
RN   [2]
RP   1-2623
RA   Coco D., Calil I.P., Santos A.A., Inoue-Nagata A.K., Fontes E.P.B.;
RT   ;
RL   Submitted (31-MAY-2012) to the INSDC.
RL   Bioquimica e Biologia Molecular, Universidade Federal de Vicosa,
RL   A.v.P.H.Rolfs, s/n, Campus Universitario, Vicosa, MG 36570000, Brasil
XX
DR   MD5; 48377ff0be551fe05daead48328d6ae5.
XX
CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2623
FT                   /organism="Soybean chlorotic spot virus"
FT                   /segment="DNA-A"
FT                   /host="Glycine max"
FT                   /isolate="BR:Jai9254.10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1221206"
FT   CDS             199..954
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:J7GX59"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:J7GX59"
FT                   /protein_id="AFP87130.1"
FT                   /translation="MVKRDAPWRHMAGTSKVSRSSNFSPRGGGGPKNNRASEWVNRPMY
FT                   RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(951..1349)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:J7H433"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:J7H433"
FT                   /protein_id="AFP87131.1"
FT                   /translation="MDSRTGELITARQAENGVYIWEISNPLYFKMNHVEDPLHTTTRIY
FT                   HVQIRFNHNLRRALALHKAYLNFQVWTISLRASGTTYLNRFKFLVMLYLERVGVISLNN
FT                   VIRAVRFATDKSYVNYVLENHVIKFKFY"
FT   CDS             complement(1096..1485)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:J7GWN5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:J7GWN5"
FT                   /protein_id="AFP87133.1"
FT                   /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHLNCAG
FT                   HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDEPRRGSTTHNDQNIPRPDQVQPQPEESI
FT                   GSPQGISQFPSLDDIPESFWDDIFK"
FT   CDS             complement(1427..2482)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:J7H065"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7H065"
FT                   /protein_id="AFP87132.1"
FT                   /translation="MPPPKRFRINAKNYFLTYPQCSLSKEAALEQIISLQTPSSKKFIK
FT                   IARELHDDGQPHLHVLLQFEGKFCCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT                   DKDGDTIEWGEFQVDARSARGGQQTANESYAKVLNADNLERALQILKEEQPKDFVLHHH
FT                   NIRSNLERIFAKAPEPWAPPFHLSSFTLVPQEMQDWVNDYFGRGAAARPERPISIIIEG
FT                   DSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGVPCIILCNPGEGSSYKSFLDKEENAGLKGWTLHNAKFVFLN
FT                   SPLYQSSTQSS"
XX
SQ   Sequence 2623 BP; 680 A; 556 C; 611 G; 776 T; 0 other;
     accggatggc cgcgcgattt tttatggccc ttttcttttg ggctcgttct tttggaccga        60
     gtgtatttga attaaagtaa agttattccc ctgtccaatg aaaatttgtc tgagtggtct       120
     agataagccc aacttggtac ccaagttggt tctaacggtt atatattcaa gaataactga       180
     ctaattcttt aattcaaaat ggttaagcgg gatgccccat ggcgccacat ggcagggacc       240
     tcaaaggtat cccgctctag caatttttca cctcgtggag gaggaggtcc aaaaaacaac       300
     agggcctctg aatgggtcaa caggcccatg taccggaagc ccaggatata tcggatgtat       360
     agaacccccg atgtacctag aggttgtgaa ggcccttgta aggtccagtc ctttgaacag       420
     cgacacgata tatcccatgt tggtaaggtg atatgtgtgt ctgacgtgac aagaggtaat       480
     ggtattaccc atcgtgtagg gaaacgtttt tgtgttaagt ccgtttatat tctaggtaag       540
     atatggatgg acgagaatat caagttgaag aatcacacga acagtgtgat gttttggttg       600
     gttagagaca ggagacccta tggcacccct atggactttg gccaagtgtt caacatgttc       660
     gacaatgaac ccagtactgc tacggttaag aacgatcttc gtgatcgttt tcaagtcatg       720
     caccggttct atgccaaagt cactggtgga caatatgcga gcaacgaaca ggcattggtc       780
     aggcgttttt ggaaggtcaa caatcatgtt gtctacaacc accaagaagc agggaaatac       840
     gagaatcata cggaaaacgc attattattg tacatggcat gtactcatgc ctctaacccc       900
     gtgtatgcaa ctctaaaaat tcggatctat ttttatgatt cgataaccaa ttaataaaat       960
     ttgaatttta ttacatgatt ctcaagtaca taatttacat atgatttgtc tgttgcgaaa      1020
     cgaacagctc ttattacatt gttaagcgag ataacaccta ctcgctctaa gtacagcatg      1080
     actaggaatt taaatctatt taaatatgtc gtcccagaag ctctcaggga tatcgtccag      1140
     acttggaaat tgagatatgc cttgtggaga gccaatgctc tcctcaggtt gtggttgaac      1200
     ctgatctgga cgtggtatat tctggtcgtt gtgtgtagtg gatcctctac gtggttcatc      1260
     ttgaaataga ggggatttga tatctcccag atatagacgc cattctctgc ctgacgtgca      1320
     gtgatgagtt cccctgtgcg tgaatccatg tcctgcgcag ttaagatgga cgtatatgga      1380
     gcacccgcaa tctatatcaa ttcgtcttct cctgatagcc ctctttttag ctgctctgtg      1440
     ttgaactttg atagaggggg gagttgagga agacgaattt cgcattgtga agggtccaac      1500
     ctttcaatcc tgcgttttcc tctttgtcga ggaaagattt atagctggag ccctcgccag      1560
     gattgcaaag tataatgcaa ggaacccctc ctttaatttg aactggcttt ccgtatttgc      1620
     agtttgattg ccagtctttt tgagcaccta tcaattcctt ccaatgcttt aactttagat      1680
     attgcggtgc gatgtcatct attacgttgt actgcacatc atttgaatag acccgcgaat      1740
     tgaaatcgag gtgaccggac aagtagttat gggaccctag cgcacgtgcc cacatggtct      1800
     tccccgttcg agagtcaccc tcgattatta tactaatagg tctttccggc cgcgcagcgg      1860
     cacctctccc aaaataatca ttgacccaat cttgcatctc ctgtggaact aaagtgaacg      1920
     aggagaggtg aaacggagga gcccatggct ccggagcctt agcaaagata cgctctaggt      1980
     tagagcgtat gttgtggtga tgaaggacga agtccttcgg ctgttcttct tttaatattt      2040
     gaagggctct ttctaggttg tctgcgttca gaaccttggc gtatgactcg tttgcagtct      2100
     gttgaccacc tcttgcagaa cgagcgtcga cctggaattc tccccattca atggtgtctc      2160
     catccttgtc gacgtaggac ttgacgtcgg agctcgactt agctccctgt atgtttggat      2220
     ggaaatgtgc tgaccttgtt ggggaaacca agtcgaacaa tctgttattt gtgcagcaga      2280
     acttcccttc gaattgaagc aggacatgga gatgaggctg cccatcgtcg tgaagttctc      2340
     ttgctatctt gataaacttc ttactgctag gtgtctgcaa cgagataatt tgttcaagag      2400
     cagcctcttt tgataaggag cactggggat atgtgaggaa atagtttttg gcatttatac      2460
     ggaaacgctt tggtggtggc attcttgtaa ataaaacgat gtcaccaatt cgctccgctc      2520
     taaaactcta tagcaattgg tgaattggtg acaatatata ctagaaccct caatagaact      2580
     tctaatcctg ttcgcacacg tggcggccat ccgctataat att                        2623
//