ID   JX112706; SV 1; linear; genomic RNA; STD; VRL; 1380 BP.
XX
AC   JX112706;
XX
DT   16-JUN-2013 (Rel. 117, Created)
DT   16-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus isolate CoC671 HC-pro gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1380
RA   Viswanathan R., Parameswari B., Bagyalakshmi K., Chinnaraja C.,
RA   Karrupaiah R., Ganesh Kumar V.;
RT   "Sequence comparison, phylogeny and homology modeling of helper component
RT   proteinase (HC-Pro) of Sugarcane mosaic virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1380
RA   Viswanathan R., Parameswari B., Bagyalakshmi K., Chinnaraja C.,
RA   Karrupaiah R., Ganesh Kumar V.;
RT   ;
RL   Submitted (30-MAY-2012) to the INSDC.
RL   Pathology, Sugarcane Breeding Institute, Veerakeralam, Coimbatore, Tamil
RL   Nadu 641007, India
XX
DR   MD5; d7a0e0baa6ea8e1895fc6b360a60d220.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1380
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="sugarcane COC671"
FT                   /isolate="CoC671"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Bagyalakshmi, K"
FT                   /collection_date="01-Jun-2011"
FT                   /identified_by="Viswanathan, R"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..>1380
FT                   /codon_start=1
FT                   /product="HC-pro"
FT                   /db_xref="GOA:R9QE23"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:R9QE23"
FT                   /protein_id="AFM82507.1"
FT                   /translation="ADPQANDFWRGYTDAYVENRNISTTHTEHTPTINLEECGKRMALL
FT                   EILFHSTFKITCKTCNIDDLELSDDEFGAKLFKNLQRIEEQQREYLAKDQKLMRMIRFI
FT                   KERCNPKFSHLPLLWQVAETIGHYTDNQAKQILDISEALIRVNTLTPDDAMKASVALLE
FT                   VSRWYKNRKESLKVDTLESFRNKISPKSTINTALMCDNQLDKNANFVWGNREYHAKRFF
FT                   ANYFVIVDPTDAYEKHVTRFNPNGQRKLSIGKLVIPLDFQKIRDSFVGLSINKQPLGKA
FT                   CISKIDGGYVYPCCCVTTEFGKPAYSEIIPPTKGHITIGNSVDPKIVDLPNTTPPSMYI
FT                   ARDGFCYINIFLAAMINVNEDSAKDYTKFLRDELVERLGKWPKLKDVATACYALSVMFP
FT                   EIKNAELPPILVDHENKSMHVIDSYGSLSVGFHILKARTIGPLITFLYESMKSEMRDYL
FT                   VG"
FT   mat_peptide     199..1284
FT                   /product="P1 protein"
FT                   /function="protease"
XX
SQ   Sequence 1380 BP; 471 A; 272 C; 281 G; 356 T; 0 other;
     gctgatccgc aggccaatga tttttggaga ggctacacag atgcttatgt ggagaatcgc        60
     aacatatcga caactcacac agagcacaca cctaccataa atcttgagga atgtggaaaa       120
     cgaatggcgc tacttgagat attattccac tcaaccttca aaatcacatg caaaacgtgt       180
     aacattgatg atttggaact atcggatgat gaatttgggg ccaagttatt caaaaacctg       240
     caacgcattg aagagcaaca acgtgaatat cttgctaagg accagaagtt aatgcgaatg       300
     attcgattca tcaaggaacg gtgtaatcct aaattttcac acttacctct actctggcag       360
     gttgctgaaa ctatagggca ctacactgat aatcaagcaa aacagatact ggacataagc       420
     gaagcactca ttagagttaa cactttaact cccgatgatg ctatgaaagc aagtgtcgca       480
     ttactggaag tgtcaagatg gtataaaaac cggaaagaat cacttaaagt ggatactttg       540
     gaatcattcc gcaataaaat ctcaccaaag agcacaatca acacagcact gatgtgcgat       600
     aatcaattgg ataagaatgc caacttcgtt tggggaaata gggagtatca tgcaaagcgt       660
     ttctttgcca attacttcgt gatagtggac cccactgatg cttatgagaa gcatgtaaca       720
     cgttttaatc caaatggtca acgcaagtta tcgattggga aactagtgat accactagat       780
     tttcagaaga tcagagactc atttgtgggc ctatcaatta acaaacaacc attaggcaaa       840
     gcgtgcatta gtaaaatcga cggagggtac gtatatccat gctgttgtgt cactactgaa       900
     tttggtaaac cagcatattc tgaaataata cctccaacta aaggacatat aacaatcgga       960
     aattctgttg acccaaaaat agtggacctg cccaacacaa caccaccaag catgtacatt      1020
     gcacgagacg gattttgtta catcaatatt ttcctcgcag caatgattaa cgtgaacgaa      1080
     gactccgcaa aggattatac aaaatttcta agggatgagt tggtggaacg tcttggaaag      1140
     tggccaaaac ttaaggatgt tgcaacagct tgttacgcat tgtccgtgat gtttccggaa      1200
     atcaaaaatg ctgaattgcc gccaattcta gtggaccatg agaacaaatc aatgcacgta      1260
     attgattcat atggctctct aagtgttgga tttcacattc taaaggcaag gacaataggt      1320
     ccgcttatca catttcttta tgaatctatg aaaagtgaaa tgagagatta cctagtagga      1380
//