ID JX105428; SV 1; linear; genomic RNA; STD; VRL; 7551 BP. XX AC JX105428; XX DT 21-AUG-2012 (Rel. 113, Created) DT 21-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Grapevine virus F isolate AUD46129, complete genome. XX KW . XX OS Grapevine virus F OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7551 RX DOI; 10.1128/JVI.01444-12. RX PUBMED; 22879616. RA Al Rwahnih M., Sudarshana M.R., Uyemoto J.K., Rowhani A.; RT "Complete genome sequence of a novel vitivirus isolated from grapevine"; RL J. Virol. 86(17):9545-9545(2012). XX RN [2] RP 1-7551 RA Al Rwahnih M., Sudarshana M., Uyemoto J., Rowhani A.; RT ; RL Submitted (26-MAY-2012) to the INSDC. RL Department of Plant Pathology, University of California - Davis, One RL Shields Ave., Davis, CA 95616, USA XX DR MD5; 5c54e40434267393a4c7efa243af1b90. DR EuropePMC; PMC3416117; 22879616. XX FH Key Location/Qualifiers FH FT source 1..7551 FT /organism="Grapevine virus F" FT /host="Vitis sp." FT /isolate="AUD46129" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="grapevine" FT /collection_date="01-Jan-2011" FT /db_xref="taxon:1221437" FT 5'UTR 1..90 FT CDS 91..5274 FT /codon_start=1 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:J7HA37" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:J7HA37" FT /protein_id="AFP95341.1" FT /translation="MSISVSSQRVAAASLYTNGDKTIIDQIKVIKSERLKKIEVEVDGL FT FDYYVSDFMRDFISKLGIHTSVHSFVAHPHPVSKMFENYILYRCISSYIGNSNLFISCK FT EAKVKRFKFGRNGLEAKNTRYNRLIHSKDHFRYEWCTRNKNLEHIPEVREGTKTCDTVV FT IHDEVQYWSLADLQNFLGNVEDNTNVLYSVVYPAEITTGITFSLFPEAYEFEVHDGYFI FT WYPDGKAEGAYKQPINPWLLTTSKTEDVRYRTWTITKLQTVGAHHLFSCTPGSTITEDS FT YTYDQFTLINPYNCFAGRVHGRQTVRLRARMVKPVLLYLMALRKPDCGSAVAKIRMLSH FT DEESCEEAIFVAELAKLISDLSLYNSMGAFNAWEAVKKVFHRAMGPWWTYLVNRRLFNE FT DSMHEFIANCDSAVITVPRIYRACVEVRKTLRAPLGHHWHEDEEVFGLLYLSELAKGDR FT CSEVYSIPARELQEARVVAPITRILRSHELVREQMLVQEVELNTVHIAATPGNLIKMFR FT KCVIRLSAFRFMETRLLTEYNSVEESLTNGWMTDERAMEILFGVVEAPILQEKVSEVEM FT PTADHTVGPATCSKITDATKGKVEVFLKQVKYLDKLKGRVCAFYSKYSTGYTYTGGSHI FT SQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGT FT AEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSEGRISLTFRNKTVDYMN FT SDAVSDYEEDAPDVDDGLRSIQANRANLCTLQCIADHIKLDLPILVARLNATNPEYISE FT LSKGGPTLPTFINLCAKMDIPLQISGVHGGLQTRGNFKKLCVFMGEDHVERVEETVGRN FT NAYDAFSLHPNSGRGTFYPNREYAEKLSESMFEGHTGILLNKFKRGKSVIKDVRKEIKF FT VSFFGFAGSGKSYYPQTVLQHTFGIRALVISPRKALAADWSSKIGSRAKVVTFEKAVVE FT EEVFSCIVVDELGLYPPGYLDLICLLHEPSTLVLLGDPLQGTYYNKDDRIKLATVSHNV FT FARLEGSLPYLMYSHRLSKSNRTFDIDTHGNLESAGSQRVKKLDTKMPTIYAARATKES FT AEGTAYTVSETQGLSFKDVQVLIDKDWALKEDGDVIVAFTRARGTTKYMCSDSDMDMLK FT ARAKSEVLRSILRAGKVGRDTILNSLRKEMPNAEPVFTEARLANTEEYEEKLMGDPYLK FT GMLRLLQEEEIEEEECEEPMAPEPVKTHLFLSEGVNEMAPFMFVNQSGQRVKLGDRFNR FT EQKTTAGLTAQIDEMGYAGQNENPCTHKALYLHHKMDXAATFMLSVRKRLRFRDPEKNR FT ARYEKHKGIGRQMFDVLKKTYHWTSIDSLPPLEKAEADFMKKRLNKSAALLERHNIRSD FT PDWPSNIIKIFLKQQVCTKLEKRGVDAKAGQTIACFSHAVLCKFGPIMRQTERKLRELL FT PPNVMIYSQKNYSDLDVWAKTYVDTMVGTDSDYEAFDRSQDEKILDLEVEVLKFFLWPE FT ELIREYVELKLQMSCSMGNLAIMRFSGEFGTFFFNTMCNMVFTCMRYNVTDKTRLCFAG FT DDMYAPGVLEVRTDYEHILDELSLKAKVQVGDRPLFCGWRMSPYGIVKEPNLVLDRWKI FT AKGNGSLHDCMVNYAIEASYGYRLSEYLYDINIDIDAQQELTRQIVLVKDKLPPKVSSI FT FSDDANESWSDGDDEFLIKLSEPQLRMGLF" FT CDS 5308..5787 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:J7H6U0" FT /protein_id="AFP95342.1" FT /translation="MSLFRVPYSSSIDCKYITLDKLHSFVLSLDWLGVEDLYGALALLS FT AEGSSKFFARAAAVVNDLDYRTLITLGVTNFLETTDRSEEEIVDCLVKSLTNDRPRLPI FT DLHKLGRPIVVSKEGGRLSVTFRVNNKVRVAWESGSYNLSRVIERGFRVDGLIFR" FT CDS 5768..6583 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:J7HCY1" FT /protein_id="AFP95343.1" FT /translation="MASSSDNSREVKIFEVKKGATGFEELNKAISRSDVYDNELIERIM FT PKRTRKCVVHKEISVVNSRVNVEMEIMDDGVVGKLDEEAYPIYHAGCLVVALMPHGRNV FT KGKVALRFKDRRLKAGKDVIGSMVADLKKGISAHAEFPGYFISTADLKAGYTLQLEIAT FT DELDFKDGVHPFSIQLISIGRFCGEDLDTRYLLQQNGTRMYQHLLNSENEFRCVPKGLD FT VKMNDTTLVMPEVYETIKKLNLKHHGSDIKKDEHEGGGRNTGPVRGQPE" FT CDS 6507..7103 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:J7H706" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:J7H706" FT /protein_id="AFP95344.1" FT /translation="MAQISRRMNMREVVETLVLSGANLSENTETAGYDKQMYLRTLFGY FT IALVGTSKKAVHYGEVQIMGPRTNKVRGVDARGVINIAEQVNRMRGLSVAVTEGVAKDA FT TVRQMCEPFAKEAYEALIMLAGLGVYSQLAIKMSRLGNKEPQVMFDFAAGLDVGSLSRQ FT EATVMQAMHARLFRTEHAKEVFDAQASVGEQAAEI" FT CDS 7140..7469 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="UniProtKB/TrEMBL:J7HDV3" FT /protein_id="AFP95345.1" FT /translation="MAKRRRRRRLGVCKCGALAHNDSMCNKKPISGTKLDRLEFVRLGR FT VTIEGETPVAQNTMSKVLGIYSEIVFHLSDSARAVIGRKNKNIRLSRMSGVKGSPEEYP FT ECYNY" FT 3'UTR 7470..7551 XX SQ Sequence 7551 BP; 2233 A; 1426 C; 2091 G; 1798 T; 3 other; ggaaaattga tttagtttcc gacattctat acgtgcacaa aacctctcct catttattaa 60 ataaggaaag cttttaaaac acctgtagga atgtcaatct cagttagtag tcaacgagtg 120 gcggcagcct cgttgtatac caacggagat aaaactataa tcgatcaaat taaggtgatc 180 aaatcagaaa gattaaagaa gatagaagta gaagtagatg gtttatttga ttattatgtt 240 agtgatttta tgcgtgattt tatttctaag ttaggtattc acactagtgt acattctttt 300 gtagcccacc cacacccggt atctaaaatg tttgaaaatt acatcttgta caggtgcata 360 tcatcctata taggtaacag taatttattc attagttgta aggaggcaaa ggtaaagagg 420 ttcaagtttg gacgcaatgg ccttgaggca aagaatacaa ggtacaacag gttgatccat 480 tcaaaggatc atttcagata tgagtggtgc actcggaata agaatttaga gcacataccg 540 gaggtaaggg aaggtacaaa gacatgtgac acagttgtaa tacatgacga agttcaatac 600 tggtcactgg cagatctgca aaattttttg ggtaatgtgg aagataatac aaatgtatta 660 tactcagtgg tttacccggc agagatcaca actggtataa cattctcgct attccccgaa 720 gcttatgagt ttgaagtcca tgatggttac ttcatctggt accctgacgg aaaagcagaa 780 ggtgcatata aacagccgat caacccatgg ctgcttacca catccaaaac tgaggatgtt 840 agatatagga cctggacaat caccaaactg cagactgtgg gagcacatca cctgttttca 900 tgcacaccag gttctaccat cacggaggat agctacacct atgaccagtt caccttgata 960 aacccttaca attgctttgc tggaagggtg cacgggcgac aaactgtgag gttgagggca 1020 agaatggtga agcccgtatt gttgtatctg atggctttgc ggaagcccga ttgtggctca 1080 gcggtggcaa aaataagaat gctcagtcac gatgaggagt cctgtgagga ggcaattttt 1140 gtggcggaac tagctaagct gatctcggac ttatcgctat acaatagcat gggggctttt 1200 aacgcatggg aagcagtgaa gaaggtcttt catagggcga tggggccttg gtggacctat 1260 ttagtgaacc gcagactctt caatgaggat tcaatgcatg aattcatcgc caattgcgac 1320 agcgcggtaa taacagtgcc aagaatttac agagcatgtg ttgaggtgcg gaaaactttg 1380 agagcaccac tgggtcatca ctggcatgag gatgaggagg tttttggtct gttgtaccta 1440 agtgaacttg caaagggaga cagatgttca gaggtctact ctatacccgc aagagagcta 1500 caagaagcta gagtggtagc accgatcacg aggattctga ggtcccatga attggtacgg 1560 gagcagatgt tggtgcaaga ggttgagctc aatacagtgc acatcgcggc tacccctggc 1620 aacctcatta aaatgtttag aaagtgcgtg ataagattgt cagcattcag attcatggaa 1680 acgaggctgc ttacagagta caacagtgtg gaagaatcgc tcactaatgg ctggatgaca 1740 gatgagcgag caatggaaat actctttgga gtggttgagg ccccaatact gcaggagaag 1800 gtgtcagagg ttgaaatgcc aacagcggac cacacagtcg gaccagcaac gtgtagcaag 1860 atcacggatg caacaaaggg aaaagttgag gtgttcctaa agcaggttaa gtaccttgac 1920 aaactcaaag gtagggtctg tgctttctac tcaaagtact ccactgggta cacatacaca 1980 gggggctcac atatttccca agggatgcca gaatccctgg tagagttgcg gagatctatg 2040 gggttgggag aggagtatga ccactgccta gttcaaaaat atgaaaaaga cggtgccatc 2100 ccttttcacg cagatgatga aaaatgctat ctccctggtt cttgtgtggt aaccctgaat 2160 atgcatggta ctgctgaatt catgctgaag gagaatggga aagaggaggt gcacagagtg 2220 accctagagg atggcgatgt cctggttatg ccggaagggg ttcaggagaa ctacaagcac 2280 tctgtactgg tcaaatccga agggcgaatt agccttacgt tcaggaacaa gactgtggac 2340 tacatgaatt ctgatgctgt gtcagattat gaggaagatg cacctgacgt ggatgatggg 2400 ctgaggagta tccaggcaaa cagagcaaat ctgtgcacac tccagtgcat tgcagatcat 2460 atcaagctgg atttgcccat actagtngca agattgaatg ctactaatcc agagtacatc 2520 tccgagctgt ctaaaggagg gcccacactg cctacattta taaatctgtg cgcaaaaatg 2580 gacataccac tacagatcag tggtgtgcat ggcggtctcc aaacaagggg gaattttaag 2640 aagctatgtg tgttcatggg ggaggatcat gtggaaagag tggaagaaac agtgggacgc 2700 aacaatgcct atgatgcttt ctcgctccac ccaaactctg gcaggggtac attctaccca 2760 aacagggagt atgcagaaaa gctcagtgag agcatgtttg aaggtcatac gggtattctg 2820 ctgaataaat tcaagagagg caagagtgtg attaaagatg tgaggaagga gataaaattc 2880 gtgagcttct ttggttttgc cggatcgggc aagagctact accctcaaac tgtactccag 2940 cacacattcg gcattcgggc acttgtgatc agcccaagaa aggcattagc tgctgattgg 3000 agctcaaaaa tcgggtcgcg agcaaaagtg gtgacgtttg aaaaggcggt ggtggaggaa 3060 gaagtgttta gctgcatagt ggtggatgag ttgggcctgt accctccggg ttatctggat 3120 ctaatctgtc tgttgcatga gcctagcacc ctggtgttgt taggagaccc cttacagggc 3180 acctactaca acaaggacga tagaataaag ttggccaccg tcagccacaa tgtgttcgca 3240 aggcttgagg gctcattgcc ttaccttatg tactcacaca ggctatccaa aagcaaccgc 3300 acatttgaca tagatacgca tggtaatctt gaaagtgcgg ggagtcagag ggtaaagaaa 3360 ttggacacaa agatgccaac catatatgct gctagagcga caaaggagag tgctgaggga 3420 acagcttaca ctgtgtcaga aactcagggg ctcagcttca aggatgtgca ggtgctcatt 3480 gacaaggatt gggcactgaa agaagatggg gatgtaatcg tggcatttac tcgggcacga 3540 gggacaacaa agtacatgtg ctcagattct gatatggata tgctcaaggc aagagcaaaa 3600 agtgaggtgt tgcgatcaat actaagggct ggtaaagtcg ggagagatac aatcctgaat 3660 tctctgagga aagaaatgcc gaatgctgaa cccgtattca cagaagcgag gttagcaaac 3720 accgaggagt atgaagagaa gctaatgggt gacccttatc tgaagggcat gctaagactc 3780 ctacaagagg aggagatcga ggaggaagag tgcgaagaac cgatggcacc ggagccagtg 3840 aagacacatt tgttcctaag tgagggggtg aacgagatgg cacctttcat gtttgtcaac 3900 cagagcggtc aaagggtaaa gctaggggat cgattcaaca gggagcaaaa gactaccgct 3960 ggtcttacag ctcagattga cgaaatgggt tacgcaggtc agaatgaaaa cccatgcaca 4020 cataaggctt tatacctcca tcacaaaatg gatgangcgg caaccttcat gctatctgtg 4080 cgaaaacgcc tccgcttcag agaccccgaa aagaacaggg cccggtatga gaagcataaa 4140 gggataggtc ggcaaatgtt tgatgtctta aagaagacat atcattggac ttctatagat 4200 tcactacccc cacttgagaa agcagaggct gacttcatga aaaagaggct gaacaaaagt 4260 gctgcattgc tggagcggca caacataagg agcgaccctg attggcctag caacataatc 4320 aaaatattcc tcaagcagca agtgtgcacg aagctggaga aaagaggggt ggatgcaaag 4380 gcgggccaaa ctatcgcctg tttctctcat gcagtcttgt gcaaatttgg tccaatcatg 4440 cgtcagacag agagaaagtt gagggagctg ctacccccga atgtcatgat ttactcgcag 4500 aaaaattact ctgatctgga tgtgtgggcg aagacatatg tcgacaccat ggtggggact 4560 gattctgatt atgaggcntt cgatagatct caggacgaga agatattgga cctggaggtg 4620 gaagtgctca aattcttcct atggccggag gagctgatta gagagtacgt ggagttgaaa 4680 ctccaaatga gctgcagtat ggggaacttg gcaatcatga gattttctgg ggaatttggg 4740 acgtttttct tcaacacaat gtgcaacatg gtgttcacat gtatgaggta taacgtcaca 4800 gataaaacca gattatgctt tgctggggat gatatgtacg cacctggcgt actcgaggtc 4860 cggacagatt atgagcacat actggacgag ctgagcttaa aggcaaaggt gcaggtgggg 4920 gatagaccac tcttctgtgg gtggcgcatg agcccgtacg gaattgtgaa ggagccgaat 4980 ttggtactcg atagatggaa gatcgcaaaa ggaaacggat cattgcacga ctgcatggtc 5040 aattatgcga tagaagcatc ctatgggtac agactgagtg aataccttta tgacatcaac 5100 atagacattg acgcccagca agagctcaca cgccaaatcg tgttggtgaa ggacaaattg 5160 ccacctaagg tgagtagcat cttttctgat gatgcaaatg agagctggag cgacggggac 5220 gacgaattct tgatcaagct gagtgagcca caactcagga tggggttgtt ttaaattccg 5280 cgtttaggta gggtgtgcta ggtaataatg agcttgttta gggtgccata cagtagtagt 5340 atagattgta aatatattac tttggataag ttacactctt ttgtgctttc attggattgg 5400 ttgggagtgg aggatctgta cggtgcgctt gcattactct ctgcggaagg gagttccaaa 5460 ttctttgcac gtgcggctgc tgtggtgaat gatctagatt acagaactct cataactttg 5520 ggagtgacaa actttctaga gaccacagac aggagcgagg aagaaatcgt ggattgtttg 5580 gttaaatcgt taacaaacga tagacccaga ctgcccattg acttgcacaa attggggaga 5640 ccaatcgtgg tgagtaagga aggaggtaga ttaagtgtaa cctttagggt caataataaa 5700 gttagagttg cttgggagtc aggtagctat aatttgagtc gagtgataga gcgcgggttc 5760 cgtgttgatg gcctcatctt cagataactc aagggaagtg aaaatcttcg aagtgaagaa 5820 aggagccaca gggttcgagg agctgaataa agcgatctcc agaagcgatg tgtatgacaa 5880 tgagctcatt gagcggataa tgccgaagcg cacacgcaaa tgtgtggtgc acaaggaaat 5940 ctctgttgtt aactcaaggg ttaatgtgga gatggagata atggacgatg gcgttgtcgg 6000 taagctcgat gaggaggcgt atccgatcta ccacgcagga tgcttggtgg tggcactgat 6060 gccccacggc aggaacgtta agggtaaggt cgcgcttcgc ttcaaggacc gtaggctcaa 6120 ggcgggaaag gacgtgattg ggagtatggt tgcggatctc aagaaaggca taagtgcaca 6180 tgcagagttt ccaggttatt tcatatccac tgccgacctg aaggctgggt acaccttaca 6240 gctagagata gctactgatg agttggactt caaagatggt gtacacccgt tcagcataca 6300 gctgatcagc atcgggcggt tttgtgggga agatctggac acaaggtatc ttctacagca 6360 gaatgggaca agaatgtatc agcacctgct gaattcggaa aatgagttca gatgtgtccc 6420 gaaaggcttg gatgttaaga tgaatgatac tactcttgtt atgccagagg tctatgagac 6480 aataaagaag ctgaatttga agcaccatgg ctcagatatc aagaaggatg aacatgaggg 6540 aggtggtcga aacactggtc ctgtcagggg ccaacctgag tgagaacacg gagactgctg 6600 ggtacgacaa gcaaatgtac ttgaggaccc tcttcgggta cattgcgcta gttggaacca 6660 gcaagaaggc ggtacattat ggggaggttc agataatggg gccgcgcact aataaggtta 6720 ggggtgtaga tgctaggggt gtaataaaca tagctgaaca ggtcaaccgc atgcgggggc 6780 tgagtgtggc agttacagag ggtgtggcaa aagatgcgac tgtgcgtcag atgtgcgaac 6840 cctttgctaa ggaagcatac gaggctctta tcatgcttgc gggcctgggt gtgtactcgc 6900 agctagcaat aaagatgagt aggttaggca ataaagaacc gcaggtcatg tttgatttcg 6960 ctgcaggtct ggatgtcggg tcactaagta ggcaagaagc aacggttatg caggcaatgc 7020 atgctcggct gtttcgcact gaacatgcca aagaagtgtt cgacgcccag gcttctgtcg 7080 gtgaacaagc agctgagatc tgacgtgaag ggcctcttcc gctctccggg aatagtaata 7140 tggccaagag acggaggagg aggcgtctag gtgtgtgtaa gtgtggtgca ttagcacata 7200 atgatagtat gtgtaataag aaacctatct cggggaccaa actcgataga ctggaattcg 7260 taagactggg aagagtaacc atcgaaggtg agactccagt ggctcaaaac accatgtcta 7320 aagtgttggg tatatattct gagatagtgt ttcacctttc agattccgca agggcggtga 7380 tcgggaggaa aaataaaaat attcggctta gccggatgag tggtgtgaag ggttctccag 7440 aagagtaccc agagtgttat aactactgaa gttatatgac ccgtgctaaa aagtgagtac 7500 acttaatacg tagcgagcac ggttgtccac atgggggaca aaaaaaaaaa a 7551 //