ID JX080201; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC JX080201; XX DT 21-NOV-2012 (Rel. 114, Created) DT 21-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Apple stem grooving virus isolate AC, complete genome. XX KW . XX OS Apple stem grooving virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6496 RX DOI; 10.1007/s00239-012-9518-z. RX PUBMED; 23149596. RA Liebenberg A., Moury B., Sabath N., Hell R., Kappis A., Jarausch W., RA Wetzel T.; RT "Molecular evolution of the genomic RNA of apple stem grooving RT capillovirus"; RL J. Mol. Evol. 75(3-4):92-101(2012). XX RN [2] RP 1-6496 RA Liebenberg A., Wetzel T., Moury B., Sabath N., Hell R., Kappis A., RA Jarausch W.; RT ; RL Submitted (15-MAY-2012) to the INSDC. RL RLP Agroscience, AlPlanta - Institute for Plant Research, Breitenweg 71, RL Neustadt an der Weinstrasse 67435, Germany XX DR MD5; ab8293b5a5740e19d9bdaefad905faef. DR EuropePMC; PMC4118050; 24998458. XX CC ##Assembly-Data-START## CC Assembly Method :: Clustal W Ver. 1.4; BioEdit Ver. 7.0.4; CC DNAStar Ver. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Apple stem grooving virus" FT /host="Malus x domestica" FT /isolate="AC" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2009" FT /db_xref="taxon:28347" FT CDS 37..6354 FT /codon_start=1 FT /product="241K polyprotein" FT /note="contains replicase and coat protein" FT /db_xref="GOA:K7PFX8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:K7PFX8" FT /protein_id="AFM37508.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFRSVAFFSLRE FT NKVNNFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFSSFRDRVIGLRDQCLMRN FT KFPKVLFLHDELHFLSPFDVAFLFETIPEIDRVIATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVVVLDKVNFIETRFHARMFEIAEAIGVSLSLLGK FT RFDYEAESEEYFSENGYLFMPSRTNPSRNWILNSGSVKVDFQKLQRARRFRLRRDFVDL FT IARRETPRKQLFLESAQTLQSTSKSVEENMDSGVKSDESSKKILSLEVPCVPMSTEDGQ FT GFEGSIPIDLINSFEPEAIRLPKRKRKNDCVFKAISAHLGIDVQDLLNFLVNEDISDEL FT LECIDEDKGLSHEMIEEVLVTKGISMVYTSDFKEMAVLNRKYGVNGKMYCTIRGNHCEL FT SSKECFIRLLKEGGEAQMSNENLNADSLFDLGKFVHNRERATKLAKSMARGTTGLLTEF FT DPEFCKGMVTLSEMFPENFSSVVGLRLGFAGSGKTHKVLQWINYTPSVKRMFISPRRML FT ADEVEIQLRGTSCQVHTWETALKKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRKIVKG FT QSEKFLRGKLAELSKTCLNIRCFGDPLQMRYYSAEDTNLLDKTHELDLMVKTIKHKYLL FT QGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGLILVAKREDKGTFAGRIP FT VATVSESQGMTISKRVLICLDQNIFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTLWQFVLEGKTIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEIVGDVIEPVEWFKCHIPVFDTDPMLAEIFDKVAAKEKREFQSILGLSNQFLDM FT EKNGCRIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKFEEFEAQGKEL FT LSEFISMLPFEFKVNIKDVEEGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHAFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIERAFLRSCGESYYIHSGKNFF FT CLDSFVTKNAEVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLK FT RRKGEKATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGSEWQSSMSTISSRKSNQRISKLMPSLPRNCTKMPLFSNQMCSTVSSDLNQMSRCLQ FT GQVMGSYCLISNCLMTQRSTPLERRATNTSICIMESFWSGLRLCYRTLGEWRGGSLCMT FT VHAWTQKEVTFVPTYSNLSPTVVTLGLDRNIAYPQPMQIWLKGSDLEWILIVHNTSRTQ FT SCLLSTLGLHTGVSIQPGSWKLRLVIQDGLHRRSAAVRHLNSMKKSRWQSWITNHRCFW FT KKVHQTCILKRECLGVTKSEGHALSLQKGGQTQGYRKREDLGPSQLESKDLEKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFEGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQRKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSRGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT CDS 4788..5750 FT /codon_start=1 FT /product="36K protein" FT /note="movement protein" FT /db_xref="GOA:K7PFV9" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:K7PFV9" FT /protein_id="AFM37509.1" FT /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIKR FT FESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNFRG FT MEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFRVDF FT DCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEIKMAI FT LDHKSPLFLEEGAPNVHIEKRMFRGDKVRRSRSISAKRGPNSRLQEKRGFRSLSARIER FT FGENEFGRRASTSETPPGRSVSMEDTHRSGKGTSDGSSP" XX SQ Sequence 6496 BP; 1945 A; 1218 C; 1508 G; 1825 T; 0 other; aaatttaaca gcgcttaatt tccgcgcttt acgtcaatgg ctttcactta cagaaatccc 60 ctcgaaattg caatcaacaa gcttccaagt aagcagtctg atcaactgct ttctttaacc 120 acagacgaga ttgaaaagac cttagaagtg actaatcgct tcttctcttt ttctatcact 180 ccagaagatc aagaattgtt gaccaagcat ggtctaacac ttgcacccat tggatttaag 240 tcacattccc atccaatatc caaaatgata gaaaatcacc ttctgtacat atgcattcca 300 agtcttttat cttcttttag atccgtagcc tttttctcgc ttagagaaaa taaagtcaat 360 aattttctta agatgcactc agttttttca catggaaaaa ttaagtctct aggcatgtac 420 aacgccatca ttgatggaaa agataaatac aggtatggcg aagtttcttt ttcttccttt 480 agagataggg tgattggtct cagggatcaa tgcctcatgc gtaataaatt tccaaaagtt 540 ctctttctcc acgatgaact tcatttccta agcccttttg acgttgcttt tctatttgag 600 acaatcccag aaattgatag agtcatagca actactgttt ttccgattga actgcttttt 660 ggggacaagg tttcaaagga gcccagagtt tacacctaca aggtccatgg ttcctccttt 720 tcattctatc cagatggtgt agcctctgag tgctatgagc aaaatcttgc aaactctaaa 780 tggccgttca cttgtagtgg aatccagtgg gctaacagga aaataagggt tactaagttg 840 cagagcctct ttgctcatca cgtattttca tttgatagag gcagggcttg caacgaattt 900 aaccactttg acaagccgag ttgtctcctt gcagaagaaa tgcgcctttt gaccaaaagg 960 tttgataagg cagtcattaa taggagtacg gtttcttctt tgagcactta tatggcttgt 1020 ctcaagaccg ccaatgcagc ttctgctgtc gccaagctga ggcaactaga gaaaagggac 1080 ctctatccgg atgaactaaa cttcgtttat tcctttgggg agcatttcaa aaattttgga 1140 atgagggacg attttgatgt gtcagtccta caatgggtga aagacaaatt ctgtcaagtt 1200 atgcctcact tcattgctgc cagtttcttt gagccaactg agttccattt gaatatgcga 1260 aaattgttga atgacctggc cactaaaggg atagaggttc cactttcagt agtggttttg 1320 gataaggtaa attttataga gaccagattt catgccagga tgttcgaaat tgccgaagct 1380 attggagtca gtttaagtct acttggaaaa aggtttgact atgaagctga aagtgaagaa 1440 tatttttcag aaaatggcta tctttttatg ccttcaagga caaatccaag tagaaactgg 1500 atcttaaact ctgggtctgt caaagttgat ttccagaagt tgcagagggc aaggaggttc 1560 agattgagaa gagatttcgt tgatttgatc gctagaaggg aaacccctcg aaagcaacta 1620 ttcctcgagt cagctcaaac tctccaatca acgtctaaaa gtgtggagga gaacatggac 1680 agtggagtca aatccgacga aagcagtaaa aaaatactgt cactcgaggt gccctgtgtc 1740 ccgatgtcca ctgaagatgg gcaaggcttt gaaggttcaa ttccaattga cttgataaat 1800 tccttcgagc cagaagcaat cagacttccg aaaaggaaga gaaagaatga ttgtgttttc 1860 aaagccatct ctgcacacct cggcattgat gttcaggacc tcttgaactt tttggtaaat 1920 gaagacatat ccgatgagtt gcttgaatgc atagatgaag ataaaggcct gtcgcacgag 1980 atgatagagg aagttctggt gacgaaaggg atttctatgg tctacacttc agatttcaaa 2040 gagatggcag ttctcaacag gaagtatgga gttaatggaa aaatgtactg cacaatcagg 2100 gggaatcatt gtgagctgag ttcgaaggaa tgcttcatca gattgctgaa ggagggtggt 2160 gaagcacaaa tgtccaatga gaatttgaat gctgactcct tgtttgatct tggaaagttc 2220 gtgcacaaca gagaaagggc cacaaaattg gcaaaatcga tggctagggg cacaaccggt 2280 cttttgactg agtttgatcc agaattttgc aaaggtatgg tcacactttc ggaaatgttt 2340 ccggagaact tctcctctgt tgtaggactg aggttgggct tcgctggttc cggaaaaacc 2400 cataaagttc ttcaatggat caactacaca ccaagcgtca aaagaatgtt tattagtcca 2460 aggagaatgc tggccgacga ggttgaaatt caattaagag ggacatcttg tcaagttcat 2520 acttgggaaa cagctcttaa aaagattgat ggaaccttca tggaggtctt tgtggatgaa 2580 attggccttt acccacctgg atatctcact cttctacaaa tgtgtgcttt ccgaaagatc 2640 gttaaggggc aaagtgaaaa gtttttaaga ggaaagcttg ctgaactttc gaagacctgt 2700 ttgaatataa ggtgttttgg tgacccattg caaatgaggt attattctgc agaggataca 2760 aaccttctag acaagacaca tgagctcgat ctaatggtca aaaccatcaa acacaagtac 2820 cttcttcaag ggtataggtt cggccaatgg ttccaagagc tgataaacat gccaactaga 2880 gtggacgatt cgaaattttc aaggaaattt tttgcagaca tttctagtgt caaaaccgaa 2940 gattatggac tcatacttgt cgccaagagg gaagacaagg ggacgtttgc cgggagaata 3000 cctgtggcta cggtcagcga atcacaggga atgaccataa gcaagagggt gctaatatgc 3060 ttagaccaaa atatatttgc cgggggagcc aatgccgcca tagttgcgat cactagatcg 3120 aaagttgggt ttgactttat tctcaaaggg aattcactaa aagaggtgca gaaaatggcc 3180 caaaaaactt tgtggcaatt cgtacttgaa ggaaagacca taccgatgga aagaattgtc 3240 aatatgaacc ccggagccag cttttatgag agccccttag acgttggcaa ctcgtccatt 3300 caggacaaag cctcacatga cttgttcata atgcctttta tcaatttagc tgaagaagaa 3360 gttgaccctg aggaaatcgt cggagatgtt attgaaccag ttgagtggtt caaatgccat 3420 ataccggttt ttgatacaga cccgatgctt gcggagatat ttgacaaagt ggcagcaaag 3480 gaaaagagag aatttcagtc catacttggg ctttcaaatc aatttcttga catggaaaaa 3540 aatggatgca gaatcgatat tttgcctttt gctagacaga atgttttccc tcaccatcaa 3600 gcttcagatg acgtcacctt ttgggcaggt gttcagaaga ggataaggaa gtcaaattgg 3660 agacgggaaa agtcaaaatt tgaggagttt gaagctcagg ggaaagaatt gctcagtgaa 3720 ttcatatcaa tgttgccctt tgaattcaag gtaaacatca aggacgttga agaaggtgaa 3780 aaaagctttc ttgaaaaaag aaagttaaag tctgaaaaga tgtgggccaa ccactcagaa 3840 agatctgaca ttgactggaa acttgaccat gcctttctat ttatgaaatc tcaatattgc 3900 acaaaggaag gcaaaatgtt cactgaggca aaagctggtc aaaccttagc atgtttccaa 3960 cacattgttc tgtttaggtt tggtcccatg cttcgagcaa ttgaaagggc ttttcttaga 4020 agttgtggag agtcatacta catacattca gggaaaaact ttttctgctt ggacagcttt 4080 gtgacaaaaa acgcagaagt ctttgatggg ttttctattg aatctgacta cacggctttt 4140 gactcatctc aggaccacgt aattttggcc tttgaaatgg cacttttgca gtacctaggg 4200 gtgtccaaag agtttcagtt ggattatttg agattgaaat tgacccttgg ctgcagactt 4260 ggatctctag ccattatgag gttcactggg gaattctgca cttttttatt caatacattt 4320 gcaaacatgc ttttcactca gttgaaatac aaaattgacc cgaggaagca taggattcta 4380 tttgctggag atgacatgtg ctctctaagt tctctcaaaa gaagaaaagg ggaaaaggca 4440 acaagactgc tgaagagctt ttctttaact gctgtggaag aggtacggaa gtttccaatg 4500 ttctgtgggt ggtacttgag cccatatggg attatcaagt ctccaaagtt gttgtgggcc 4560 aggatcaaga tgatgagtga aagacaactt ttaaaggaat gtgtggataa ctatctgttt 4620 gaagctatat ttgcctacag attaggtgag aggctttaca caattttgaa agaagaggac 4680 tttgagtatc attaccttgt cataaggttt ttcgttaaaa attctaagtt gctgacaggg 4740 ttgagcaaaa gcctcatttt cgaaattggt gaagggattg ggtcagaatg gcaatcgtca 4800 atgtcaacca tttcctcaag gaagtcgaat caacggatct caaaattgat gccatctctt 4860 cctcggaatt gtacaaagat gccacttttt tcaaaccaga tgtgctcaac tgtatcaagc 4920 gatttgaatc aaatgtcaag gtgtcttcaa ggtcaggtga tgggctcgta ctgtctgatt 4980 tcaaactgct tgatgacaca gagatcgact ccattagaaa gaagagcaac aaatacaagt 5040 atctgcatta tggagtcatt ctggtcggga ttaaggctat gctaccgaac tttaggggaa 5100 tggaggggag ggtcattgtg tatgacggtg catgcttgga cccagaaaga ggtcacattt 5160 gttcctactt attcaaattt gagtccgact gttgttactt tgggcttaga ccggaacatt 5220 gcctatccac aaccgatgca aatttggcta aaaggttcag atttagagtg gattttgatt 5280 gtccacaata cgagcaggac acagagctgt ttgctctcga cattggggtt gcatacaggt 5340 gtgtcaattc agccaggttc ttggaaacta agactggtga ttcaggatgg gcttcacagg 5400 cgatcagcgg ctgtgaggca cttaaattca atgaagaaat caagatggca atcctggatc 5460 acaaatcacc gctgtttctg gaagaaggtg caccaaacgt gcatattgaa aagagaatgt 5520 ttaggggtga caaagtcaga aggtcacgct ctatctctgc aaaaaggggg ccaaactcaa 5580 ggctacagga aaagagagga tttaggtccc tctcagctag aatcgaaaga tttggagaaa 5640 atgagtttgg aagacgtgct tcaacaagcg agacgccacc gggtaggagt gtatctatgg 5700 aagacacaca tagatccggc aaaggaactt ctgacggttc ctccccctga aggattcaag 5760 gaaggtgaaa gctttgaagg cagagagctt taccttcttc tctgcaacca ttattgtaaa 5820 tatttatttg gtaatattgc tgttttcggg tcatctgaca agacccagtt tcccgctgtt 5880 ggatttgata cccctccggt tcattacaat ctaacaacga ccccgaaaga aggggagact 5940 gaagagcaaa ggaaggccag agaaggttcg tctggcgaaa aaacaaaaat ttggagaatc 6000 gacctgtcaa atgttgtacc cgaattgaaa acttttgctg ccacttccag gcagaactct 6060 ttgaacgaat gtacgttcag aaagctttgt gagccatttg ctgatttggc tcgggaattt 6120 cttcatgaaa gatggtcaag gggacttgcc accaacattt ataagaaatg gcccaaagct 6180 tttgaaaaaa gcccttgggt ggcttttgat tttgccaccg gtcttaaaat gaaccgtcta 6240 acgcctgatg aaaaacaggt aatagacaga atgactaaga ggctttttcg tactgaagga 6300 caaaaggggg ttttcgaggc gggttcggag agcaatctgg aactggaggg ttagaagtcg 6360 tgtaaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6420 aataaagggt tcccccggtt ttctgtgcat ttccgggtta gtgtggtttt tctagagtct 6480 agagtttgtc cactct 6496 //