ID JX073657; SV 1; linear; genomic RNA; STD; VRL; 2911 BP. XX AC JX073657; XX DT 06-AUG-2012 (Rel. 113, Created) DT 06-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Tobacco streak virus isolate Henry segment RNA 2, complete sequence. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2911 RA Singh A.K., Ghabrial S.A., Domier L.L.; RT "Complete nucleotide sequences of RNAs 1, 2 and 3 of Henry soybean isolate RT of Tobacco streak virus"; RL Unpublished. XX RN [2] RP 1-2911 RA Singh A.K., Ghabrial S.A., Domier L.L.; RT ; RL Submitted (17-MAY-2012) to the INSDC. RL Department of Plant Pathology, University of Kentucky, 201F Plant Science RL Building, 1405 Veterans Drive, Lexington, KY 40546, USA XX DR MD5; f47ef1a4a85e1e5df4a5793c7bfb2e53. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..2911 FT /organism="Tobacco streak virus" FT /segment="RNA 2" FT /host="tobacco" FT /isolate="Henry" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="12-Mar-2009" FT /db_xref="taxon:12317" FT CDS 42..2429 FT /codon_start=1 FT /product="polymerase" FT /db_xref="GOA:I7ELX2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I7ELX2" FT /protein_id="AFP24897.1" FT /translation="MDSVIKNLIVFHLRRRIDIGTSFGIEPADYIDWVKVFLMKFIIEH FT TARFADFATIHTTMLLVLGEDDPNYVEKDTPITEIDPFYLPYDDLDVDYTSLRACGDED FT QSCSDRDELSDFISNISHVPEGTSWGSVSDTSFVEHLETIQDIPTKYEITDKPVEEIPF FT DDDGKVVDDVWVNAELSNAPEISCDADIRACGFVSYASGSSEVSKWTPKVSQVKPDPSV FT IQAAVDEIFPHHHSVDDRFFQEWVETHDIDLEVTSCDLDMSTFNDWTKGVDTRLVPNMS FT VGGLSHRVPTQREALLAIKKRNMNVPELQSNFDHDDVLNRCVTRFITHVVDKTRLSKLN FT PISGEELHYFNQYLENKNPPLSEYKGPVPLVALDKYMHMIKTTLKPVEEDNLHIERPIP FT ATITYHKKGVVMMTSPYFLCAMVRLLYVLKSKFVVPTGKYHQIFQMNPELLKHSKEFKE FT IDFSKFDKSQGRLHHDVQFRLFLALGIPEHFVTTWFNSHEKSYIRDRDCGIGFSVDYQR FT RTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAVSGDDSLIGSIEPLPREKEDLCVSL FT SNFETKFPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYYQ FT SLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANRMKFVRRTIN FT LESSRACIRNDVYSDLVPHFDSRVSRCDDSDGVRTSTFDDRKSSKHASDKLRKTECYGE FT ARCRTKPRRNRKSESGAVQYSQSSGIETGRAKPSRKGRVKLH" FT CDS 2155..2772 FT /codon_start=1 FT /product="2b protein" FT /db_xref="UniProtKB/TrEMBL:B7TX64" FT /protein_id="AFP24898.1" FT /translation="MFIPILFLTLTLASADVMTLMESEPQPSTTESRPSMPPINSGKPS FT VTEKPGVELNPGETVKVKAEQSNTVNPVELKLEERSPPGRVGSNCIDCAISNLPEAMFS FT VKVPKLNINFEVSDFPSSRLIFATLAQRVKSIPFIESLSFPSDIQRMQLRALGDVEVLI FT SIPKFGWKQILKLSDVVSGFDIPKIPSIAPKVESCVGDCLNS" XX SQ Sequence 2911 BP; 816 A; 581 C; 638 G; 876 T; 0 other; gtgtattact gacacatatc tgggtcagaa cctcctgaaa tatggattcc gttatcaaaa 60 acctcattgt gtttcacttg agaagacgaa ttgacattgg cacgtcattc ggtattgagc 120 cggctgatta tattgattgg gtaaaagttt ttcttatgaa attcataata gaacacacag 180 ccaggtttgc tgattttgcc accattcaca ccacgatgtt gttagtactg ggtgaagatg 240 atccaaatta cgtagagaag gacactccaa taacggagat tgaccccttc tatttaccgt 300 atgatgatct tgacgtggac tatacttcat tgcgtgcgtg tggtgatgaa gaccaatcct 360 gttccgaccg tgatgaattg agtgatttta tatcaaacat ttcacacgtc ccagagggta 420 cttcctgggg tagtgtatca gatacctctt ttgtcgagca tcttgaaaca attcaagata 480 taccgacaaa atatgagatt actgataaac cggtcgaaga aattccattt gacgatgatg 540 gtaaagtcgt agacgatgtt tgggttaatg ccgagctttc aaacgctccg gaaatctcct 600 gtgatgccga catacgcgct tgtggatttg tttcttacgc ctctggaagt tccgaggtat 660 cgaaatggac cccgaaggtg agtcaggtta aacccgaccc ttctgtaatt caagccgcgg 720 ttgatgagat tttcccccac caccactctg ttgacgacag attcttccaa gaatgggttg 780 aaacccatga cattgacttg gaagtcacga gttgcgatct cgatatgtcc acatttaatg 840 attggacaaa aggggttgac actagattgg taccaaacat gagtgtcggt ggtttgtccc 900 acagggttcc aacacagcgt gaagctttgt tggcaataaa gaaaaggaat atgaatgttc 960 ctgaacttca aagcaatttc gatcacgatg atgttttaaa ccgatgtgtt actagattca 1020 taacacatgt cgtcgataag actcgattat cgaaattgaa tccgatatct ggtgaagaat 1080 tacattactt caaccagtat ttggaaaata aaaatccgcc tttaagtgaa tacaaaggcc 1140 cggtgccatt ggtggcttta gataagtata tgcacatgat aaagaccacc ttgaagccag 1200 tggaagagga taacctccac attgaacgac cgattcccgc gactatcact tatcacaaga 1260 aaggagttgt catgatgact tctccatatt ttctgtgcgc gatggtcagg ttgctttatg 1320 tgttaaagtc aaaatttgtt gtgccaactg gaaaatacca ccagatcttt caaatgaatc 1380 ccgagttgtt gaaacactcg aaggaattta aagagattga tttttcaaaa ttcgataaat 1440 ctcaaggtcg attacatcat gatgtgcagt ttcgtctttt cttagctctt ggtataccgg 1500 agcattttgt aactacttgg ttcaattccc atgaaaaaag ttacattaga gatcgagact 1560 gcggtatcgg attttccgtt gattatcagc gacgaactgg tgatgcatgc acctaccttg 1620 ggaacacttt ggtaacatta agtgttctca gttatgtgta tgatttatca aatccaaata 1680 ttttatttgt tgccgtcagt ggcgatgaca gtttaattgg atctattgaa cccttaccgc 1740 gtgaaaaaga ggatttgtgc gtatcccttt ccaattttga aacaaaattt cctcacaacc 1800 aaccattcat ttgttcgaag ttcttattgg ttgttgagtg cgatgatggg tctgaagaag 1860 ttttagcagt tcccaatcct ctgaaacttc ttcaaaaact tggtcctaag aaccttcaag 1920 tcactgtttt agatgactat tatcagagtc tttgtgacat tttgtgggtt tttaatgatg 1980 ccgacgtgtg tcgaagaacc gccgaattgg cggaatacag acgtttcaaa ggaactaaga 2040 aatgtctgtt tctggagtcc gctcttctga gcttgcctag tttagtggcg aacaggatga 2100 aatttgttcg aagaactatc aatttagaga gttctagagc ttgtattcga aacgatgttt 2160 attccgatct tgttcctcac tttgactctc gcgtcagcag atgtgatgac tctgatggag 2220 tccgaacctc aaccttcgac gacagaaagt cgtccaagca tgcctccgat aaactcagga 2280 aaaccgagtg ttacggagaa gcccggtgta gaactaaacc ccggagaaac cgtaaaagtg 2340 aaagcggagc agtccaatac agtcaatcca gtggaattga aactggaaga gcgaagccct 2400 cccggaaggg tagggtcaaa ttgcattgac tgtgccattt ccaacttgcc agaggcgatg 2460 ttctctgtca aggttccgaa gttgaatatc aacttcgagg tgtctgattt tccgtcttca 2520 aggttaatat ttgccacgtt agcccaaaga gtgaagtcta ttccctttat tgagtctctg 2580 agttttccca gcgatattca aaggatgcag cttcgtgctc taggtgacgt agaagtcctc 2640 atctccattc caaaatttgg ttggaaacaa attttgaaat tgtctgatgt ggtttccggg 2700 tttgatatcc cgaagatccc gtccatagct cccaaagtgg agtcatgtgt cggtgattgc 2760 ctaaattctt gatttaggta tttcctctct tatagagaga tgccgctttg cgaagatgtc 2820 agtaggtggg cgaaacatac gcttctttat gttttctact gatattccag ttatatctaa 2880 tgatataact gatgcctcca aatggagatg c 2911 //