ID JX073656; SV 1; linear; genomic RNA; STD; VRL; 3482 BP. XX AC JX073656; XX DT 06-AUG-2012 (Rel. 113, Created) DT 06-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Tobacco streak virus isolate Henry segment RNA 1, complete sequence. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3482 RA Singh A.K., Ghabrial S.A., Domier L.L.; RT "Complete nucleotide sequences of RNAs 1, 2 and 3 of Henry soybean isolate RT of Tobacco streak virus"; RL Unpublished. XX RN [2] RP 1-3482 RA Singh A.K., Ghabrial S.A., Domier L.L.; RT ; RL Submitted (17-MAY-2012) to the INSDC. RL Department of Plant Pathology, University of Kentucky, 201F Plant Science RL Building, 1405 Veterans Drive, Lexington, KY 40546, USA XX DR MD5; 15e8fc8ad5cd83d16345f7795c207de7. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..3482 FT /organism="Tobacco streak virus" FT /segment="RNA 1" FT /host="tobacco" FT /isolate="Henry" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="12-Mar-2009" FT /db_xref="taxon:12317" FT CDS 39..3320 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:I7FR88" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7FR88" FT /protein_id="AFP24896.1" FT /translation="MDSLSLPTVSDVVVPALNVDNLIRDYVSNVRADDSNNVSRFLGEV FT ALKEIKSQVDTSNGDFQKLNVGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHR FT VCETLDIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLA FT ASVENRHRELPVDFCCHKFEDCGVKAPFAMAVHSISDIPITTVAAHCVRRGVRKLIASV FT MMDPLMMLYDKGHIPLLNVDWEKEDVESGKTLIHFHFVDAPGLSYSHDFNTLSQYMVTN FT QVIVNNSYSFRVERTACLSGVYIVEMTLSMTDGHSLAYLKPMRDVSCAWLSSLRKKVFV FT KLAVPVSAEWYTEQFEVRYALMDESLVRYVSEAAFRQFSKTKDPETLVQYIATMLSSSS FT NHVVINGITMRSGSPIKFDEYVPLAVTFYVMAAWRYKMIAPGIDAVKTRTEKNVDALDE FT KGLVKEDFNIVNEFLEEAGLVGPNLPHFTDVIKNAGLRSFGKRTIEKTRDDVSLVKPRN FT LLREVIYTVRSIFGLTILDSDYNLVSGIPSHMKATRVWSVFVGNLAFPACLNVNECVNE FT LLVNHMEMVEEAKQEETRQQAFKDARDRALMTIAKAIEKDQAVKDGLLPILDLCKIKEE FT LMTASNSLSLTPEAIENTDSRLMKASGSDVNPYADSIKEAIHYFNDVEVANTRNLRSLG FT TYLGWSIPKNKQTYDALRGRNESVRVYVPYENKWYPSAPTSHYERAMTVDGYVSLQWNS FT DAITDKCRHDLSKYHVLVVDDSCIFCSGQRMIPALEAALKLVPTFKITIVDGVAGCGKT FT THLKKIARIDASAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDSYLMLKSWFS FT AERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVVGKID FT VQTTTYRCPRDATACLKKFFYKNKTVKSASVVERSLELCPIQSVIQIQPERDVLYMTHT FT RADKETLMRIPGMPKDRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPELGPCHNLV FT AISRHRKSFRYFTVSPHDNDDQIVKCISYARSLSSGDLDGVRVLN" XX SQ Sequence 3482 BP; 956 A; 685 C; 825 G; 1016 T; 0 other; gtattactgt tttgtatccg aatcagaacc tccagataat ggattcctta tctttaccca 60 ccgtgagtga cgttgttgtt cctgctctta acgttgacaa tctcattcga gattatgtca 120 gtaacgtgag agccgatgat agcaataacg tcagtagatt cctcggtgaa gtagcattga 180 aagagattaa gtctcaagtt gacaccagta atggtgattt ccagaagttg aacgtcggtt 240 ttcgtttaac tcctgatgaa aagaatgcgc tgaaggcgaa ttttcctggt ctcgagatcg 300 catttagaga ctcttgtcat tcgtcgcaca gttttgccgc agctcatcga gtctgcgaga 360 ccctagatat atacaatcgg tttaaaacta aaaccgagcg cattatcgac cttggtggta 420 actatgttac tcacgctaaa caaggtcgtt ctaatgtgca ttcctgctgt cccatccttg 480 acgttaggga cggtgctagg cataccgatc gatatatatc tttagctgcc tctgttgaaa 540 atcgtcacag agagttaccg gttgatttct gttgccataa gtttgaggat tgtggggtca 600 aggcaccttt tgctatggct gtccactcca tcagtgatat tcctatcact acggttgctg 660 cacactgcgt taggcgcggt gtgcgtaagt tgatagcttc cgtcatgatg gacccactta 720 tgatgcttta tgacaaaggt catataccct tactcaatgt tgattgggaa aaggaagatg 780 ttgaatcggg gaaaaccctg attcatttcc attttgttga cgcacccggt ttaagctatt 840 cacacgattt taatacactg tcccaataca tggtcacgaa ccaagttatt gtgaataatt 900 cctactcttt tagagtagag aggacagcct gtttatcagg tgtgtatatc gtggaaatga 960 ccctgtctat gacagatggt cattctttag cttatctgaa gcccatgcgt gatgtgtcat 1020 gcgcatggtt gtcaagtttg aggaagaaag ttttcgttaa attagccgtt cctgtcagtg 1080 ccgaatggta tactgaacag ttcgaggtac ggtatgcgct gatggacgaa tccttagttc 1140 gctatgtttc cgaagctgcc tttcggcaat tttcgaagac aaaagaccct gaaacactgg 1200 ttcagtacat agcaactatg ttatcttcct cttcgaatca tgtggtcatt aacggaataa 1260 caatgcgaag tggtagccca atcaaattcg atgaatatgt tccactagct gttacttttt 1320 acgttatggc cgcatggcgt tacaaaatga ttgcccctgg tatcgatgct gtgaaaacaa 1380 gaaccgagaa gaacgttgat gctcttgatg agaagggtct tgtcaaggaa gactttaata 1440 tcgtcaacga atttcttgag gaagctgggt tagttggacc caatttgccc catttcacgg 1500 atgtcataaa aaatgctgga ctccgtagtt ttgggaagag gaccatcgag aaaaccaggg 1560 atgatgtttc tttagtgaaa ccgagaaact tgttgcgtga agtgatttac acggtccgga 1620 gtatcttcgg gcttacgatc ctggactcag actacaattt ggtatccggt ataccttctc 1680 atatgaaggc aactcgtgtg tggtctgtat ttgtcgggaa tcttgcattc cctgcatgcc 1740 tcaacgtcaa tgaatgtgtt aatgagttac tcgttaatca catggaaatg gtagaagagg 1800 cgaagcagga agaaacacgt caacaggcct ttaaggatgc cagagatcgt gctctgatga 1860 cgatagcaaa agctatcgag aaagatcagg ctgtgaaaga tggtctgtta ccgattcttg 1920 atttgtgtaa gatcaaagaa gaattgatga cggcctcgaa ttccttgagt ttaactccag 1980 aggccattga gaacacagat tcaagattga tgaaagcgtc cggaagcgac gtcaatcctt 2040 atgccgattc cataaaggag gccatacatt atttcaatga tgtggaagtg gccaacacaa 2100 ggaatcttcg tagtttggga acttatcttg gatggtcaat acccaagaat aagcaaacat 2160 acgatgccct aaggggtagg aatgaatctg tcagggtgta tgtaccttat gaaaataagt 2220 ggtacccttc tgcacccacc agtcattatg aaagggctat gactgttgat gggtatgttt 2280 cgcttcaatg gaattctgac gcgattaccg acaaatgtag acatgatttg tctaaatacc 2340 atgttttggt tgtcgatgat tcatgcattt tctgttctgg tcagagaatg atcccagctt 2400 tagaagccgc tttaaaactg gtcccaacct tcaaaatcac aattgttgat ggtgtcgcag 2460 gttgtggtaa gactacacat ctgaaaaaga tagcacgcat tgatgcaagc gctgcaggta 2520 gtcctgatct ggtgttgacg agtaatcgta gttcatcaga tgagcttaag gaagttatag 2580 attgtcctga tgtgatgaaa taccgcatta gaacggttga tagctacttg atgctcaaat 2640 cctggttttc agcggagcga ctattgtttg atgaatgctt cttgacgcat gcgggctgcg 2700 tgtatgcagc agccactttg gctcaggtga aagaagtaat tgcttttggt gacacggagc 2760 aagttccttt catatctaga ttaccagagt ttcgcatgga acatcataag gttgttggaa 2820 aaattgacgt ccaaacaacg acctataggt gtccaagaga tgccacagct tgtttgaaga 2880 aatttttcta caaaaacaaa actgtgaagt cagcgagtgt cgtggaacgc tcgcttgagt 2940 tatgcccaat tcagagtgtg attcagattc aaccggagcg tgatgttctg tacatgacac 3000 acacgcgagc agacaaggag accctgatga gaatacccgg gatgccgaaa gatagaatta 3060 aaaccactca tgaggcccaa ggtgaaacct gggatcatgt ggtaatgttt agactttcga 3120 agaccactaa tctgctccat tcgggaaaag gacctgaatt aggtccatgt cacaatttgg 3180 ttgccatatc tagacatcgg aaatcattta ggtattttac tgtttcacct catgataacg 3240 atgatcagat agtgaagtgt atcagttacg ccaggtcctt aagttcaggg gacttggatg 3300 gggtccgtgt tttaaactga tgcaagtttt agtgtacatc ctctgttgag gtgccgcagg 3360 tttcctgcga tgattttata tatattgcca gtggttaggc gggtgtgatg cttctccaac 3420 acacttccac tgatgctgtt tatgtctaat gatataaaca atgcctcctt taaaggagat 3480 gc 3482 //