ID JX047864; SV 1; linear; genomic RNA; STD; VRL; 8306 BP. XX AC JX047864; XX DT 12-DEC-2012 (Rel. 115, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Reptile vesivirus Cro1 isolate 780032I/1978/US, complete genome. XX KW . XX OS Reptile vesivirus Cro1 OC Viruses; Riboviria; Caliciviridae; Vesivirus. XX RN [1] RC Publication Status: Online-Only RP 1-8306 RX PUBMED; 23190937. RA Sandoval-Jaime C., Parra G.I., Smith A.W., Green K.Y., Sosnovtsev S.V.; RT "Genetic characterization of a reptilian calicivirus (Cro1)"; RL Virol J 9(1):297-297(2012). XX RN [2] RP 1-8306 RA Sandoval-Jaime C., Smith A.W., Sosnovtsev S.V.; RT ; RL Submitted (11-MAY-2012) to the INSDC. RL Caliciviruses Section LID/NIAID, NIH, 50 South Drive-MSC8026, Bethesda, MD RL 20892, USA XX DR MD5; dd5d1b018b2a4b9f8a6aa5a7b4380968. DR EuropePMC; PMC3519611; 23190937. DR EuropePMC; PMC5312078; 28196955. XX FH Key Location/Qualifiers FH FT source 1..8306 FT /organism="Reptile vesivirus Cro1" FT /host="Crotalus lepidus (Rock rattlesnake)" FT /isolate="780032I/1978/US" FT /serotype="Cro1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="1978" FT /db_xref="taxon:1266463" FT CDS 20..5662 FT /codon_start=1 FT /product="nonstructural polyprotein" FT /db_xref="GOA:K9Y4K9" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR016024" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K9Y4K9" FT /protein_id="AFZ40060.1" FT /translation="MAQTLSKISNKENASSGLWPKRFKPHQPIPTWMVRCELFDHDSRR FT GRSPERAPPQAKRVRTPTPYPRHLKPAATAVVRSGTNPSHLKPASTDVVRSGPKTLCCE FT ATDGGVVRSCKNCNLKPAHDSKAVSLSLPQTDGLTGNEPEFIAEACPSCALYDTCPNCA FT SKVINDDGSTDGTIPSWDQIETTPAFLSLLSNTDEEMSADELTNLAAHLRKAFETGSHP FT ANVDYSKDQLQGLLEMAEAALPPARRQTLPLYQQRLDVRKSWREKIFNQPLDEIIKILK FT TSKDQFQRCAAWKVILEKAVLAKEYGEQAFTYAQQALKDINSFDVNLVLKMAVASFIDN FT LRLATVDNPDLISYIPKLIVKLKPLTLKMIIDNHENTKEGWLVTLTSLAELYGMVEIAI FT DFVPTVVGNLFDLLMKATSKMYDMFKSVILATFTSESLDFSNPFWYAIAAILCFLITGA FT IPHNGKMKIIKNILTNATSVVAGIKAIQTLAAMFSTWSNERLVNDLSSRVIALTELNNP FT TITSDIDAVINLQRLAETLRDEVKSHTLNPLMQPYTPILRSLMSALDNVVSCCTRRKAI FT ATKRAAPVAIIMTGPPGCGKTTAAFALAKRLSQQKPSIISLDVDHHDTYTGNEVCIIDE FT FDSSDKVDYANFVINMVNTNPMVLNCDLIENKGKTFTSKYVIMTSNSETPVKPTSKRAG FT AFYRRVMIVDVTNNAVENWKRDNPGRPVPKWCFNKDFSHLNLSLRGTEAYCRDYVLDPT FT GRNHQSRKAPQPQQITLEQLAQKMVVQHTTNTSEFVTQAGDVPAFGFVCQNDEIDTVYN FT LLAAVKARYCANFNLYKGMVRTVHENSGCGAHVHVISREDNFRGKAFTVNRSRLESIPH FT LEGDCFRRSLGVVMSDKDVTTMFHFIKGKVINDQVNLTELPANQHVVTVHTVYDMAWAL FT RRHLKWSGQWQLIKAAYEIMCYPDTAACALRNWMDSTDFSEDHVVTQFIAPGGTIILES FT CHGARMWATGQRLIRAGGLTEAGGPEGGVRFAGLGARNVPWSEILRELMTLISHIWSQI FT KGATVVLTALTFYLKRFKPRVEAKGKNKNKGPRRNAGVALTDDEYDEWRQYRTEKKLDL FT TVEDFLQLRHRAAMGADDTDAVKFRCWYAERQRNYHDLEDVTIIGRGGVKRELIRKGPL FT RPRGNDYYDEPDDWYSEGVIDGVTHKNAIVSVDDVDGMHKGYAIHIGHGVYISLKHVMS FT GSAKVLSEDPKDITYNGELATFRLNNILPTAVPVGTSKPIKDPWGNPVSTDWKFKNYNT FT TSGSIHGACGSSCSLTRQGDCGLPYVDDHGVVVGLHAGSGGDKCPSKKLIVPYVKVDMR FT IRDTCTKQFYKDNKPTISYKGLLVKETGEPRTIMKGTRLHVSPAHTDDYEECTHQPASL FT GANDPRCPISLTGIMVNNLQPYTEASPGPDTSTLNRVSKMLVSHMEGYVPKVHKTEEDM FT ISAFYMLNHDTSCGPYIGGRKKDHVKDGVIDRKLLDLLSSKWSRAKHGLALPHEYALGL FT KDELRPKDKVAVGKRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGPA FT VEDLFRRLNRPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACATLKSN FT PIGIFNGVAFKVAGGLPSGMPLTSIINSLNHCLMVGSAVVKALEDSGVQVTWNIFDSMD FT LFTYGDDGVYIVPPLISSVMPKVFANLRQFGLKPTRTDKSDTEITPIPSDEPVEFLKRT FT LVRTDNGIRALLDKSSIIRQFYYIKAENTENWTIPPKKIDNSSRGQQLYNACLYASQHG FT EEFYANKVIPLMERAIEHEGLHIEVPEFHQAVAAYNGYFNGTEDQPNQIALASGGLGLS FT GEVFEN" FT CDS 5668..7788 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF2" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:K9Y5P3" FT /protein_id="AFZ40061.1" FT /translation="MATTHTLLSFDDLEFLLHKKDLTDLYGGRCGTLNLVINPYELFLP FT DDLEDEWCDDPFNCCFTDIYASIGTKYSYIDPPNLIHEEHCATNGTWPDGTPCEPILPP FT FNIDGTHHYYATKPGEVVCAILSKLGSSWDPSLQSTANVDTSFTFRAESDGPGSAEIVT FT EEQGTVVQQQPAPAPAALATLATASTGKSVDQEWMTFFSYHTSINWSTVEPQGKVLYSQ FT ALNPSINPYLDHIGKLYSTWSGGIDVRFTVSGSGVFGGKLAALLVPPGVEPIESVSMLQ FT YPHVLFDARQTEPVIFTIPDIRKTLFHSMDETDTTKLVIMVYNELINPYENNGETKTTC FT SITVETRPSPDFSFALLKPPGSLIKHGSIPSDLIPRNSAHWMGNRWWSTITGFSVQPRV FT FQSNRHFDFDSTTTGWSTPYYVPIEITISGDIGRNSHWFWVEDTEKALVPGIPDGWPDT FT TIPAATLASNGVFAYEEGFYNLETKTVDPSKNNTHFKGTYICGTLSTVVKTNDSQADAQ FT KKSQTMYIATAEVSGNDIKPQHKISPTKLAVFFDGPATKQTIHATLSPLGYVLVDGQPI FT GSNSSKVVRIATLPEAFTQGGNYPIFYVNKAKIGYFDKESTDCYNSQILMTTQKLAEGN FT YNLPPDSLAVYRITDSASQWFDIGINRDGFSYVGLSDLSHDLQFPLSATFMGVQLARVK FT LASKVNILRSRI" FT CDS 7785..8132 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR007996" FT /db_xref="UniProtKB/TrEMBL:K9Y6U2" FT /protein_id="AFZ40062.1" FT /translation="MNYANFGLDFLNSIASAAVEGKKLDLASKGLLLKNRALDAERDFN FT YARLAFEKHKFDTNNDLRIYGDALRVQALRAAGLRINPYSNGRQIYQDEADLANLHSYY FT SFYKTDQFQPA" XX SQ Sequence 8306 BP; 2351 A; 2168 C; 1816 G; 1971 T; 0 other; gtaaatgaga atttgagcta tggctcaaac gctctcaaaa atctctaaca aagaaaacgc 60 ctcttcaggc ctttggccta agaggttcaa accccaccaa cccatcccaa cgtggatggt 120 gcggtgtgag cttttcgacc acgactcacg tcgtggccga agccctgaac gcgctccgcc 180 acaagcgaag cgtgtcagga cacctacccc ctacccccgc catctcaaac ctgcagcaac 240 cgctgtagtt aggagtggca ccaatccctc ccatctcaaa cctgcatcga ctgatgtagt 300 taggagtgga cctaaaaccc tctgctgcga agccacggat ggaggtgtag ttaggagttg 360 caagaactgc aacctcaaac ctgcacacga ttctaaggct gtcagcctct ccctgcccca 420 aacggacgga ctcaccggaa acgaacccga attcatcgct gaggcttgcc ctagttgtgc 480 tctttatgac acgtgtccga actgcgcatc taaggttatc aacgacgatg gctcgaccga 540 cggaactatt ccatcttggg accagattga aacgacgccc gcattcctat ctctactgtc 600 caacactgac gaggaaatgt cagctgatga gctcaccaac ctggctgctc atctgcgaaa 660 ggctttcgag actggatcac acccggcaaa tgttgactac tctaaggatc aactccaagg 720 attactggaa atggctgaag ctgcactacc accagcaagg aggcaaactc taccactata 780 ccaacaaagg ctcgacgtcc gcaaaagttg gcgcgagaag attttcaacc aaccacttga 840 tgaaatcatc aaaatcttga aaacatccaa ggatcaattc caacgctgtg ctgcatggaa 900 ggtcatacta gaaaaagcag tacttgcgaa agaatacgga gagcaagcct tcacctacgc 960 gcaacaagca ctaaaggaca tcaactcatt tgacgtcaac ttggttctca aaatggctgt 1020 tgcgtctttt attgacaatt tgagattggc aactgttgac aaccctgatt tgatatccta 1080 catccccaaa ttgattgtca aactgaaacc gttaacgctc aaaatgataa ttgacaacca 1140 cgagaacact aaggaaggct ggctcgtcac actcactagc ctcgctgagc tctacggtat 1200 ggttgaaatt gcaattgact tcgtccccac agtggtcgga aacttgtttg atctgctgat 1260 gaaagcaaca tccaaaatgt atgatatgtt caaatctgtg atacttgcaa cattcacatc 1320 agaatcactt gatttctcta atcccttttg gtatgcaatt gctgcaattc tatgcttcct 1380 gatcactggg gcgatcccac acaacgggaa aatgaagatc atcaagaaca ttctaacaaa 1440 tgcaaccagt gttgttgctg gaatcaaagc cattcaaacc cttgctgcta tgttttccac 1500 atggtcaaac gagaggttgg tcaacgacct gtcatcaaga gtcattgccc tcactgagct 1560 aaacaaccca acaattacat ctgacattga cgctgttatc aatttgcaaa gattggcaga 1620 aacgcttcgt gacgaagtaa aatcacacac actcaaccca ctcatgcaac catacacacc 1680 aatcctcagg agtttgatgt ctgccctcga caatgtcgtc tcgtgttgca cacggcgcaa 1740 agccattgcc acaaagcgtg cggccccagt tgccattatc atgactggac ctcctggttg 1800 tggtaaaact actgctgcgt ttgctctcgc aaaacggcta tcacagcaaa aaccatcaat 1860 catatcgttg gatgtcgacc accacgacac ctacactggc aatgaagtgt gcataatcga 1920 tgaatttgac tcatctgaca aggttgacta cgccaatttt gtaatcaaca tggtcaacac 1980 caatccaatg gtcctgaatt gtgatttgat cgagaacaag ggaaagacat tcacctcgaa 2040 atatgtgatc atgacatcaa attcggagac acccgtgaaa cccacatcca aacgtgctgg 2100 cgctttctac aggcgcgtca tgatcgttga tgtcacaaac aatgcagttg agaattggaa 2160 gagggacaac ccaggccgtc ccgtccctaa gtggtgtttt aacaaagact tctcccatct 2220 caacctttcc ttgcgtggta ctgaggcgta ctgcagggac tatgtgttgg acccaaccgg 2280 taggaaccac caatcccgga aagcaccaca gccccaacag atcacactgg agcaacttgc 2340 acaaaagatg gttgttcaac acacaaccaa caccagtgaa tttgtcaccc aagctggtga 2400 tgtacctgcg tttggatttg tttgccaaaa tgatgaaatt gacactgtat acaatctgct 2460 tgctgcggtc aaggcaaggt attgtgcaaa ttttaatctc tataagggca tggtaagaac 2520 tgtacacgag aatagtgggt gtggggccca tgttcacgta atctccagag aagataactt 2580 cagaggaaag gcattcacag tcaacagatc tagacttgag tcaattcccc acctcgaggg 2640 ggattgtttc aggagatccc ttggggttgt catgtctgac aaagatgtga cgaccatgtt 2700 ccacttcatc aaagggaagg tgatcaacga tcaggtcaac cttactgaac tacccgccaa 2760 tcaacacgtg gtgaccgttc ataccgtgta cgatatggcc tgggctcttc ggaggcacct 2820 gaagtggtct ggacagtggc aactcatcaa ggctgcatat gaaatcatgt gttacccaga 2880 cacagcagcc tgcgcactac ggaattggat ggactcaaca gacttttccg aagaccacgt 2940 tgtcacccag ttcatcgccc ctggcggaac catcatcctt gagtcatgtc atggcgcacg 3000 catgtgggcc acaggccagc gtctcatccg cgctggtgga ctcacagagg ctggtgggcc 3060 agaaggtgga gtcagatttg ctggccttgg tgcccggaat gtaccctgga gtgaaattct 3120 cagagaactc atgactctca tctctcacat ttggtcccaa attaaaggtg caaccgttgt 3180 tctaacagcc ttaactttct atcttaaaag atttaaacca agagttgaag ctaagggcaa 3240 aaataaaaac aagggacccc ggagaaatgc tggggtcgcc ctcacagatg atgaatatga 3300 tgaatggagg caatacagaa ctgaaaagaa gcttgacctt acagtggagg actttcttca 3360 actcagacat cgggctgcga tgggtgcaga cgatactgat gccgtaaaat ttaggtgttg 3420 gtatgcagaa aggcagagaa attatcatga tttggaagat gtcaccataa ttggccgtgg 3480 tggcgtgaaa cgtgaactca tccgcaaggg gcccctccgc ccacgcggaa atgactacta 3540 tgatgaacca gatgactggt actcagaggg agtcattgat ggcgttacac acaaaaacgc 3600 catcgtgagt gtcgacgatg ttgatggcat gcacaaaggc tatgcgattc acatcggaca 3660 cggagtttac atttcactga aacatgttat gtctgggagt gcgaaggtct tatctgaaga 3720 ccccaaagac atcacctaca acggggaatt ggctacattc agactaaaca acattctgcc 3780 aacagcagtc ccagttggga catcaaaacc catcaaagat ccatggggca acccagtgtc 3840 aacagattgg aaatttaaga actacaatac aacctccgga agcatccacg gtgcttgcgg 3900 ctcatcgtgt tcactaacga gacagggtga ttgcggtctc ccctatgttg atgatcatgg 3960 tgtagttgtc gggctccacg ctggatccgg cggtgacaag tgtccatcca aaaagctcat 4020 agtcccgtat gtcaaagtgg atatgaggat tcgtgacacc tgcacaaaac agttctacaa 4080 agacaacaaa ccaacaatct cctacaaggg gctcttagtg aaggaaacag gagaaccaag 4140 aacaatcatg aaaggcacga ggctccacgt ttcaccagca cacactgatg actacgagga 4200 atgcactcac caacctgcct cactcggagc aaatgatccg aggtgtccca tatctctaac 4260 cgggattatg gtcaacaacc tccagcccta cactgaagcc tcacccggac ccgatacgtc 4320 aacattaaat cgggtatcaa agatgttagt gtcacacatg gaagggtatg ttccaaaggt 4380 ccacaagact gaagaagaca tgatatctgc attctacatg ctcaatcacg acacatcctg 4440 tggtccatac atcggtggcc gcaagaaaga tcatgtcaaa gacggggtca tagacaggaa 4500 actccttgac ctcctcagtt caaaatggag tcgtgccaaa catgggcttg ctcttccaca 4560 cgagtatgcc cttggtctca aggatgagct tcgaccaaaa gataaggtcg cagtcgggaa 4620 gcgtaggctt atctggggtt gcgatgtggg cgttagcacg gtctgtgctg cagccttcaa 4680 acgcgtctcg gaatcaatca tggccaatca cgctctcggc ttcattcaag ttggtatcaa 4740 catggatgga cctgccgttg aagatctctt cagaagactc aatcgaccaa agcacgatcg 4800 atattgtgtt gactactcaa aatgggactc tacccaacca ccaaaagtca catctcagtc 4860 aattgacatc ctcaggcact tcactgataa atccccaatt gttgattcgg cctgcgcgac 4920 actcaaatca aacccaattg gcatcttcaa cggtgtcgcg ttcaaggttg ctggtggtct 4980 accctcgggt atgccactaa cgtccatcat caactccctg aatcactgtc tcatggtggg 5040 ttcggctgtc gttaaggctc ttgaagactc aggtgtgcaa gtgacgtgga acatcttcga 5100 ttcgatggac ctgttcactt acggtgacga cggtgtctac atcgtcccgc cactcatttc 5160 ctctgtcatg cccaaagtct tcgcgaacct aagacagttt ggcctgaaac cgacccggac 5220 cgacaaatcg gatactgaga taacgcctat tccttctgat gaaccagttg agtttctcaa 5280 gcggacactt gttcgcactg ataacggcat tcgtgcattg ttagacaaat catccataat 5340 tcggcaattc tactacatca aagcagaaaa cactgaaaac tggacaatcc caccaaagaa 5400 aattgacaac tcatcacgtg gccaacaact atacaatgca tgtctctatg ccagtcagca 5460 cggagaggaa ttctatgcca acaaggtcat cccgcttatg gagcgggcaa ttgaacatga 5520 gggcctacac attgaagtcc cggaattcca tcaagccgtt gcggcttata acgggtattt 5580 caatggtact gaggaccaac caaaccagat cgctctcgcg agtggtggac ttgggctcag 5640 tggtgaggtg tttgagaatt agccattatg gctaccactc acacgcttct gtcgtttgac 5700 gacctcgaat ttctcctaca caagaaagac ctaaccgacc tctacggagg aaggtgtggc 5760 accctcaact tggtcatcaa tccttatgaa ctctttctgc ctgatgatct tgaagatgaa 5820 tggtgtgatg atcctttcaa ctgttgcttt actgatatct atgcttcaat aggaactaaa 5880 tacagctaca ttgatcctcc caacctcatc catgaagaac attgtgcaac aaacggaacc 5940 tggcccgatg gtacaccgtg cgagccaatc ctccccccgt tcaacatcga cgggactcac 6000 cattactacg ccacaaaacc tggtgaagta gtgtgtgcaa tcttgtccaa actcggctcc 6060 tcttgggatc cttcccttca gtccacagca aacgttgata catccttcac gtttcgggca 6120 gaatcggacg gtccaggtag tgctgagatt gtgacggagg agcaaggtac cgtggtgcaa 6180 caacaacctg cacccgcacc agccgccctg gcaaccctcg ccacggcgtc gacaggaaaa 6240 tcagtcgatc aagagtggat gaccttcttt tcttaccaca cttctatcaa ctggtcaaca 6300 gtggaacccc agggcaaggt gctctactca caggcactca acccatcgat caacccttac 6360 ctcgatcaca ttgggaagct gtactcaaca tggtccggcg gaatcgatgt taggttcacc 6420 gtatctgggt ctggggtgtt tggcggtaaa ctcgccgcgc ttctggtccc cccaggcgtt 6480 gagcccatcg aatccgtttc catgcttcag tacccacatg ttctgtttga tgcccgtcaa 6540 acggaacctg tgatcttcac aatccccgac atccggaaga ctctcttcca ctcgatggat 6600 gagacggaca caacaaaact tgtgatcatg gtctacaatg agttgatcaa cccatatgag 6660 aacaatggtg aaacaaaaac aacatgctcc atcactgttg aaactaggcc ttcccctgac 6720 ttcagcttcg ccctcctgaa acctcctggc tcactgatca agcacgggtc gataccatcc 6780 gacctcatcc ctcggaactc agcccactgg atgggaaatc ggtggtggag cacaatcacc 6840 ggattctctg ttcagccccg agtcttccaa tccaatcggc actttgactt cgattcgact 6900 acaacaggat ggtcaacccc ctactatgtg ccaattgaaa tcacaataag tggtgacatt 6960 gggagaaaca gtcactggtt ctgggtggag gacaccgaga aggcgctggt cccaggaatt 7020 ccagacggtt ggccggacac aacgattcca gccgccacct tagcgtccaa cggggtcttc 7080 gcctacgaag aaggcttcta caacctcgag accaagactg ttgacccgag taagaacaac 7140 acacacttca agggcacata catatgtggt acattgtcaa ctgttgtaaa aaccaacgac 7200 agtcaagctg atgcacagaa gaaatcccag acaatgtaca ttgcaactgc tgaagtgtcg 7260 ggcaatgaca tcaaaccaca acacaagatc tccccaacaa aattggctgt gttcttcgat 7320 gggcccgcaa ccaagcagac cattcacgca accctgagtc cactcggata cgttttggtc 7380 gacggccaac caattggttc taattcatcc aaagtagtaa gaattgccac ccttccggag 7440 gcgttcacac aaggaggaaa ttacccaatt ttctatgtca acaaagcaaa gattgggtat 7500 ttcgataaag aatcaactga ttgctacaat agtcaaattc ttatgaccac acaaaaactt 7560 gctgaaggca attacaacct cccccccgac tctcttgccg tctatagaat cactgactct 7620 gcatctcaat ggttcgacat cgggataaac cgtgacggtt tttcctatgt tggcctgtct 7680 gacctttctc atgatcttca attccctctt tctgcgacct tcatgggagt gcagctagca 7740 cgtgtcaagc tagcatccaa ggtcaacatc ctcagatcaa gaatatgaat tacgccaatt 7800 tcggtctcga cttccttaac agcattgcta gcgccgctgt tgaaggtaaa aagcttgatt 7860 tggcatcaaa aggtctgcta ttgaagaatc gcgccctgga tgcagagcgc gacttcaatt 7920 acgcaagact cgcatttgaa aagcataaat ttgacacaaa caacgacctc agaatctacg 7980 gtgacgcgtt acgtgtgcaa gctcttcggg ctgcagggct acgcatcaac ccgtactcaa 8040 atggtcgcca aatttatcaa gatgaagctg accttgcaaa tctgcactct tactatagct 8100 tctacaaaac ggaccagttc caacctgctt aacaattttc taaaacttta gcctatgctt 8160 tatttccttt tatcagttcc ttatttagtt agttaagtgt tttatacttt cacctctgtc 8220 tatctttata attaatggga taattgttct taatctagta gactgtagga ttagttaatt 8280 ggtaggttgc attgggaaaa aaaaaa 8306 //