Dbfetch
ID JX047202; SV 1; linear; genomic RNA; STD; VRL; 1936 BP. XX AC JX047202; XX DT 31-MAY-2013 (Rel. 116, Created) DT 12-DEC-2013 (Rel. 119, Last updated, Version 3) XX DE Rice black streaked dwarf virus isolate SDHZ9 P8 gene, complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-1936 RX DOI; 10.1007/s00705-013-1766-8. RX PUBMED; 23807744. RA Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T., RA Liu B.S.; RT "Genetic structure of rice black-streaked dwarf virus populations in RT China"; RL Arch. Virol. 158(12):2505-2515(2013). XX RN [2] RP 1-1936 RA Yin X., Li X.D.; RT ; RL Submitted (10-MAY-2012) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, 61 Daizong RL Street, Tai'an, Shandong 271018, China XX DR MD5; bc9739ecbe4c0a3faa84be4917eaef90. XX FH Key Location/Qualifiers FH FT source 1..1936 FT /organism="Rice black streaked dwarf virus" FT /segment="8" FT /host="Zea mays" FT /isolate="SDHZ9" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Aug-2008" FT /db_xref="taxon:10990" FT CDS 25..1800 FT /codon_start=1 FT /product="P8" FT /note="minor core protein" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:R4IX33" FT /protein_id="AGE44049.1" FT /translation="MTGTHDDRISLRLLFFNLWNKKRPNDPINHRKTKKKLKPQTANPT FT SNPILVSPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFNNPI FT KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDELQSNLTSRMLTGQIVKTETND FT LAERFETYYFDPRCERTSIGFLKRTAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR FT MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRGRFWTVLDDERDFLSVKTDIQA FT IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLNLLETGLSPLDDVVTIRLKD FT LLRVFKEGQDVQIIGNKGVGKSEIGAMLVARYPHLLVVDSDDYGRFLVMLLNLVPSLFK FT NYDFEINEELLTEEIYFQAMSDFIKAKQTEDVSLQTIFEYVMEGIILPNTIESGEANEE FT VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA FT YITLYSSYNSAVLNVVPRNGQVECSSSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG FT LTKGLNVLKASSIIV" XX SQ Sequence 1936 BP; 607 A; 340 C; 330 G; 659 T; 0 other; aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat ttctttaaga 60 cttttattct tcaacttatg gaacaaaaaa cgaccaaacg acccaatcaa ccaccgaaaa 120 acgaagaaaa agctaaaacc tcaaacagca aatcctacat caaaccccat tttggtatcc 180 ccttcaatta ctgagtatgc tgaacaaata tcagacgaat ttgctaaggc tcgaaaacca 240 attttagtcc cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga 300 acaggctctt accctgattt gttcaataat ccaatcaaat acctcggatt tttaattttc 360 atgcctgatg tttcaatgca tttagattct cccactgttg atcattcata ttataatttg 420 aagagaaacc ataaaatgag ttttgatgaa cttcaatcaa atttaacttc ccgaatgtta 480 actggccaaa ttgtgaaaac tgagaccaat gatcttgcgg aacgttttga aacttattac 540 tttgacccta gatgtgaaag aacaagtatc ggatttttga aaagaaccgc gattgttaga 600 tttgaattct tatcttataa atacaacaat gatttaacgc tgtcagaacg tgaaaaatta 660 cctgtttggg cttctcattt aatagctcgt atgaacgtgg agaatgtttc tttaccattg 720 gaaattagtt gtagtgcaat caatcccacc caacatttcg ctgttatagt tcttaaaaat 780 gctaaaacca atgtgacaag gggcagattc tggaccgtgt tggacgatga acgtgacttt 840 ttatctgtta aaaccgatat tcaagcgatt gaatttgaac gtaattccgt aaccactgct 900 ggcaatttaa gacatgtttt aaacaattgt ttaacattag gcgaaccttt cgccttcgac 960 ccacttgact attcttttaa acttaactta cttgaaacag ggctatctcc attagatgac 1020 gttgtgacca ttagattgaa agatttgcta cgtgtgttca aagaagggca ggatgttcaa 1080 attattggta ataaaggagt aggtaagtct gaaattggcg caatgttagt agcacgatat 1140 cctcatcttt tagttgttga tagtgatgat tatggcaggt ttttggtaat gttacttaat 1200 ttagttccct cattgtttaa aaattatgat tttgaaatta acgaagaact tttaaccgaa 1260 gaaatttatt ttcaagccat gtctgatttt attaaagcca aacaaactga agatgtttcg 1320 cttcaaacga tttttgagta tgtaatggaa ggaataattc ttcccaacac tattgagagt 1380 ggagaagcta atgaggaagt tattttagac atttttaatc gtgtttttca tagcatccaa 1440 ggttctaaat ttattggata tcgtaagttc atgattgaat atacgcgtct aatgtacact 1500 aattttaaca agagtcaaac ttgtcatttc gtccactcgt attgtgaatt gtctttcgtt 1560 cctcattcct tggcgtatat tactttatac agcagttaca actcagctgt gttaaatgtt 1620 gttcctagaa acggacaagt agaatgcagt tcttcaaaaa tgatggccaa tacgctactt 1680 catcattttt atgaaagata tacttctaat atgaatccaa ccccagtatt tttgttttct 1740 tatttctttg gtttaaccaa aggtttaaac gttctgaaag cttcatctat tattgtgtaa 1800 cattattatg tttttgtgaa gaatattatg tccttttagg gttcgactcg tataaaggtg 1860 tttcagtcca atatcttgat ggcagactag gtcaatgttc gattctagtg aagtgtgcga 1920 aaattcagct attgtc 1936 //