ID JX045649; SV 1; linear; genomic RNA; STD; PHG; 3523 BP. XX AC JX045649; XX DT 15-JUL-2012 (Rel. 113, Created) DT 03-SEP-2012 (Rel. 114, Last updated, Version 2) XX DE Enterobacteria phage C-1 INW-2012, complete sequence. XX KW . XX OS Enterobacteria phage C-1 INW-2012 OC Viruses; Riboviria; Leviviridae; Levivirus. XX RN [1] RP 1-3523 RX PUBMED; 22821966. RA Kannoly S., Shao Y., Wang I.N.; RT "Rethinking the Evolution of Single-Stranded RNA (ssRNA) Bacteriophages RT Based on Genomic Sequences and Characterizations of Two R-Plasmid-Dependent RT ssRNA Phages, C-1 and Hgal1"; RL J. Bacteriol. 194(18):5073-5079(2012). XX RN [2] RP 1-3523 RA Kannoly S., Shao Y., Wang I.-N.; RT ; RL Submitted (10-MAY-2012) to the INSDC. RL Biological Sciences, University at Albany, 1400 Washington Avenue, Albany, RL NY 12222, USA XX DR MD5; 6c0d922c14fa5827943c5a4af160662c. DR EuropePMC; PMC3430324; 22821966. XX FH Key Location/Qualifiers FH FT source 1..3523 FT /organism="Enterobacteria phage C-1 INW-2012" FT /host="Enterobacteriaceae" FT /mol_type="genomic RNA" FT /db_xref="taxon:1206313" FT CDS 152..1372 FT /codon_start=1 FT /transl_table=11 FT /product="putative maturation/attachment protein" FT /db_xref="GOA:I6X3H8" FT /db_xref="InterPro:IPR005563" FT /db_xref="UniProtKB/TrEMBL:I6X3H8" FT /protein_id="AFN37812.1" FT /translation="MRVNGTLNRTGTLEKEFTLYRTLTKAPVEGKPPSKPVTSTIRLRN FT NVVERCQRSPLRRTKADKFGWRNPTAYNRTTLLSESLGGRVTDYFSNGDVAVWTGEAGT FT GSAYHPVRFNGLLNTYHQVAVSSNLMARADTEALVKVKDMKVNYGEALAEARSTIRHLA FT KTSITLVRAIKFARSGQWHRVAKELGLRKDQVLTGKAPANRWLEYQFGWMPLLGDIKGT FT MDLLNEGFRKKGYTFSVVRQVQSEGLPLVLSSFDANTNYDGTSKYLCKTKMYCKIRNET FT LASLTRIGLADPLQVAWALVPFSFVVDWVLPVGSYLEALSATHGVDFLSGTRVHRVEFD FT FIASSQPPFNQQNVIKREGTFRSRHAGVATQRDVLTRFPFPMLYVKSPFSVSHGVSALA FT LIRSLKR" FT CDS 1379..1780 FT /codon_start=1 FT /transl_table=11 FT /product="capsid protein" FT /note="putative coat protein" FT /db_xref="GOA:I6WIS3" FT /db_xref="InterPro:IPR002703" FT /db_xref="InterPro:IPR015954" FT /db_xref="UniProtKB/TrEMBL:I6WIS3" FT /protein_id="AFN37813.1" FT /translation="MPQLQTLVLKDRAATPVNHTFAPRDITNNVGKVVESSGVPVGEKT FT YTISVRQTPENGRFRVQLRMAVPTVQNQDVGGIINPIVTRTAYVDATFTFDRTSTEQER FT KDIVGMFQDSLDPSKALVNGALINLEGVY" FT CDS 1749..1946 FT /codon_start=1 FT /transl_table=11 FT /product="lysis protein" FT /note="empirically verified" FT /db_xref="GOA:I6XI01" FT /db_xref="UniProtKB/TrEMBL:I6XI01" FT /protein_id="AFN37814.1" FT /translation="MPSLTLRVSTNLPDITVRDAIHKGYLWLRKQVAVATVWLLILTFI FT GLSSGKLRLWFDLSVTNLSG" FT CDS 1826..3394 FT /codon_start=1 FT /transl_table=11 FT /product="replicase" FT /db_xref="GOA:I6W843" FT /db_xref="InterPro:IPR005093" FT /db_xref="InterPro:IPR007096" FT /db_xref="UniProtKB/TrEMBL:I6W843" FT /protein_id="AFN37815.1" FT /translation="MAKKAGRGSDRLALNPDVHRTIVREVTSLVRSLSHESFRIKYLEE FT EWLSKINDPESGLTPKERRAAAINKWLLTEERNARTNHRLIFDSTVIDGLNTDKFFDTV FT RRFVRGIIGDEPPEDLWRFGRFSNGASTSKTRLLGRAAQKFRDTADITLEAQPYLKYFT FT EGLVSELGPVEYRTVPGNILFTVPKNALIDRVACKEPDINMYLQLAVGGFIRSRLRRFG FT IDLNDQTKNQELARIGSLTGELATVDLSSASDSITSALVQKVVSDEWFVMLDNLRCRET FT VIDGELHENHMFSSMGNGFTFELESLIFLCMSRAAAYHYGVKGTISVYGDDIIIPSPIV FT SQSQEPVRFAGLLFNDKKSFNTGPFRESCGAHWYNGIDVKPFYLREPINHVSRLIHFLN FT RLRQWCSEDGICDPRFYPIWKKWSKLIPSNLKGGWDCERIDSLVSNCYPRLTLHKVSRD FT ITTKDSGAYLTWHNLKTVDPTSSVEIEEILPLEKFVVRRYRTTRGSPGPSGWDVSRRPL FT FPQEL" XX SQ Sequence 3523 BP; 873 A; 843 C; 863 G; 944 T; 0 other; gggaaccacc cctctttcga ggggggtcag gttctttcga accgccaccg aggtggttcg 60 gacaacatcg ttgtccatta cgccatgggt ttccctttag gcgcagcttg ctttgtcggt 120 ggcgtggtta tccactccct gaggaagtat tatgcgtgtg aatggtacac tcaaccgtac 180 ggggacactg gagaaggagt tcaccttata tagaacctta acaaaggcac ctgtagaggg 240 caaacctcct tccaaacctg tgacctcaac tatcaggctt cggaacaacg tagttgaacg 300 ctgtcagcgt tctccattac gtcgtactaa agctgataag ttcggctggc gtaacccaac 360 ggcgtataat cgcaccacgc tcttaagcga atcgcttggg ggtcgtgtta ccgattattt 420 ctctaatggg gacgtagcag tctggactgg cgaggctggg acgggtagtg cataccatcc 480 cgtgcgattc aatggtctgt tgaacactta ccatcaagtc gcggtctcgt caaacctcat 540 ggctcgcgcc gacaccgaag cattggtgaa ggtgaaagac atgaaggtga actatggaga 600 ggcgctagct gaagccagat cgactatccg ccatttggcg aaaacatcga ttacccttgt 660 tcgggcgatt aagttcgccc gatcggggca atggcatcgg gtagctaagg aattgggtct 720 tcgtaaagat caagttctta cgggcaaggc acctgccaat cgctggttgg aataccagtt 780 tggttggatg cccctgcttg gtgacataaa aggcaccatg gaccttctta atgaaggttt 840 ccgtaagaaa ggatatacct tttcagttgt acgacaagta caatcggaag gtttaccttt 900 agtattgtca tctttcgatg ctaatactaa ctatgacggg acttccaaat atctctgcaa 960 aacgaagatg tattgcaaga taaggaatga aacccttgca tccctaacac gaatcggctt 1020 ggccgatccg cttcaggttg cttgggctct cgtgcccttt tctttcgtgg tagactgggt 1080 tctcccagtt ggatcctacc tcgaagccct ttccgcaact cacggtgttg actttctaag 1140 cggtacgagg gtccatagag tcgaattcga ctttatagcc tcctcgcaac ctccctttaa 1200 tcaacagaat gtgattaaga gggaaggtac tttccgtagt aggcatgcag gagtggcaac 1260 tcagcgagat gttctcacta ggtttccatt tccgatgctc tacgttaagt cccctttctc 1320 ggtatcacat ggtgtgagcg ctttagctct catcagatca ctcaaaaggt gaagcattat 1380 gcctcaactt cagacactgg tcctcaaaga ccgtgcagct actccagtaa accatacctt 1440 cgctcctcgt gatatcacga ataacgtagg taaggttgtc gagtcttccg gggtaccggt 1500 gggcgaaaag acctatacga ttagcgtgcg tcaaactccc gagaatgggc gtttccgcgt 1560 gcaactccgt atggccgtac caactgtgca gaatcaagat gtcggtggga ttattaatcc 1620 tatcgtcact cgaactgcct acgttgatgc gaccttcact tttgaccgta cttctacgga 1680 acaagagcgt aaggatattg ttggcatgtt tcaagactcc ttggatccgt ccaaggcgct 1740 tgtaaacggt gccctcatta accttgaggg tgtctactaa cctacctgac atcacagtac 1800 gtgatgccat ccataagggg tacctatggc taagaaagca ggtcgcggta gcgaccgttt 1860 ggctcttaat cctgacgttc atcggactat cgtccgggaa gttacgtctc tggttcgatc 1920 tctcagtcac gaatctttca ggataaaata cctggaagaa gaatggttga gtaagattaa 1980 cgatccagaa tccggcttaa ctcctaaaga acggcgtgct gcagccatta acaaatggct 2040 tctcacggaa gagcggaacg cccgtacaaa tcataggctt atctttgatt cgaccgtcat 2100 agacggtcta aacactgata agttctttga tactgtacgt cgtttcgttc gcgggatcat 2160 cggtgacgaa cctccagaag atttgtggcg ttttggccgc ttttctaatg gtgcttcgac 2220 atcgaagact cgactactgg gcagagctgc ccaaaagttc cgggatacag cggatataac 2280 tctagaagcg caaccatacc ttaagtattt cactgaaggt ttggtcagcg aactcggccc 2340 tgttgagtac aggaccgttc cgggaaatat cctcttcacc gttccaaaga acgcccttat 2400 tgatcgggtt gcttgtaaag aacccgacat taacatgtac ctacagcttg ctgtaggtgg 2460 gtttatacgt tctcgcctga ggcgttttgg tattgatctt aacgatcaaa ccaaaaacca 2520 agagctagcg cgtatcggat cactcaccgg tgaattagca accgtagatt tatcttcggc 2580 ttctgattcg attacctccg cacttgtgca gaaagtagtc tccgatgaat ggttcgtcat 2640 gttagataac cttcgatgcc gggaaaccgt tatcgatgga gagctgcatg aaaaccatat 2700 gttctcctca atgggaaacg gctttacgtt cgagctagag agtttaatct ttctatgcat 2760 gagtcgtgct gccgcgtacc attatggagt taagggtact atatcggtat acggagatga 2820 tattatcatc cccagcccaa ttgtatcaca atctcaagaa cctgttcggt ttgctggact 2880 cttatttaac gataagaaat ccttcaatac cgggccgttt cgtgagagtt gtggtgccca 2940 ttggtataac ggtatagatg tcaagccctt ttaccttcga gaaccgatca accacgtatc 3000 gcggcttatt cattttctga atagactacg gcagtggtgc tcggaagacg gaatttgcga 3060 cccccgcttc tatcctattt ggaagaagtg gagcaagctg attccatcta accttaaagg 3120 tggatgggat tgtgagcgta ttgattcctt agttagtaat tgttatccgc gacttaccct 3180 tcataaggta agtcgtgaca taacgactaa agactcggga gcgtacctca cttggcataa 3240 cttgaagacc gtcgatccta cttcctctgt agagatagaa gagattctac ccctggagaa 3300 gtttgtagtt agacggtatc ggactaccag aggtagtccg ggtccttcag gttgggacgt 3360 gtctaggaga cccttgtttc cacaagagtt gtagtcaagc atagcttgaa aacaatccta 3420 ggcgccactt gccgacaggc gggtggttcg cagctagtgc tgctggttgg cctcgtttag 3480 agaccttaat ggtgtagaga cccgctttgc tctacaccaa cca 3523 //