Dbfetch
ID JX040635; SV 1; linear; genomic RNA; STD; VRL; 7529 BP. XX AC JX040635; XX DT 31-JUL-2012 (Rel. 113, Created) DT 02-JAN-2014 (Rel. 119, Last updated, Version 2) XX DE Citrus yellow vein clearing virus isolate Y1 from Turkey, complete genome. XX KW . XX OS Citrus yellow vein clearing virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Mandarivirus. XX RN [1] RP 1-7529 RX DOI; 10.1094/PHYTO-06-12-0140-R. RX PUBMED; 22913410. RA Loconsole G., Onelge N., Potere O., Giampetruzzi A., Bozan O., Satar S., RA De Stradis A., Savino V., Yokomi R.K., Saponari M.; RT "Identification and characterization of citrus yellow vein clearing virus, RT a putative new member of the genus Mandarivirus"; RL Phytopathology 102(12):1168-1175(2012). XX RN [2] RP 1-7529 RA Loconsole G., Saponari M.; RT ; RL Submitted (10-MAY-2012) to the INSDC. RL Institute of Plant Virology, CNR, via Amendola, 165/a, Bari 70126, Italy XX DR MD5; c09d3a6165c7caa9700550dc8bbe1fe0. DR EuropePMC; PMC6520955; 30959816. DR EuropePMC; PMC6600777; 31303831. XX FH Key Location/Qualifiers FH FT source 1..7529 FT /organism="Citrus yellow vein clearing virus" FT /host="lemon" FT /isolate="Y1" FT /mol_type="genomic RNA" FT /country="Turkey" FT /collection_date="2000" FT /db_xref="taxon:1214459" FT CDS 79..5028 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase" FT /note="RdRp; ORF1; encodes methyltransferase, helicase and FT GDD domains typical of replicase of several RNA viruses" FT /db_xref="GOA:I7CYN5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:I7CYN5" FT /protein_id="AFO65010.1" FT /translation="MATIRGAIERITDTTVRTTLQEEACRQIRAELKNVEHINRYAVQP FT DAADALEHLGIGSNPFSVALHTHGACKAIENQLLYVVGTLLPKERVTMPFLKKSKLNIM FT KRCPKFQDIFLNQHIEPRDVSRYCDFNVQSTSTSIPTRTAYISDTLHFMDRRDLVRLFL FT NSPNLETLYATIVLPVEAAYKQPSRYPEIYQINYDFDGFQYIPGGHGGGAYHHEFEQLQ FT WLDTGHIHWRGPDCKEIRMTITAQMLESLGANHLFCFKRGKLLTPRVRTFGRDTQVLLP FT KIFRPADKNFNRAIPLTLANKLLLYAKSINTVTFRDVVAKTRQLMKDKELETYTGNGLL FT HMANYFFAVGALSGVNSYDQLLGLSAWEACTVRIKNTITNLWEKIAGKKEFGKLLEALE FT WETSTYSRQVTEFTVTGLPALLPLPDISDQEEIFAQQDELDKITAGATKIRTIDIMRGQ FT ANRTNPKTPINSTPAQGPQLPDTRNPIDQAASKELVTKLQKNKRIYIQDDGPEYLMGHM FT AEVPAWYLEQDDTTTRLKNRCAWFFGPPTYRYGHNDIEYTTIEYYPWVERIGAIFGKYN FT TCLAQTYDAGARIGYHADDEDCYDPDVTVVTVNLTGNATFLLKTPTGTRTWKLKPGDFI FT IMKPGAQRCTKHAIRDCTTNRTSLTFRWQARTCPTNLRKITNLPKATNQPQTTEWRPVT FT KPRPSTTASSDTQTPLVTDQEQGHTTTADVTPTIRLPAENGNNAGAGPSSALTLADLND FT NQAPTTNKGKEKLEEMVETGPTIMERFLNTVQEPTQDLWDSTSESAASYLAEGLGISTV FT QALPWAPHLELINALGFQGTERQYGPDNCLIWPITHYRELPRSNNVEAPPEVLELLDCI FT NRYPTDVPMLKTRAAAFGSDVKNLRIGELVKNQDKQWRASLALLCEENEHLLPTTVIHG FT AGGSGKSHLLQQWVASTERGNVVTILPTIELLRDWQNKCPHAPKETFKTFEKALIQNSA FT PVVIMDDYSKLPPGYIEAYVSLKGQCKLLILTGDPRQSHYHEENPEALISTLDPATDYF FT GKFCAYNINATHRNAKTFANALGVYSEKEIPTTITCSSYQKSGWPTLVPSILKRTALND FT MGQRSLTYAGCQGLTTPKVQIVLDNATPLCSDKVMYTALSRAVDQIHFFNTGPNHTDYW FT EKMNATPFLKTFIDHTREETFAEHQPAEPTVREYAPATHFPPANENLALEPWVEPLTDK FT HSRELFHSALGHSNCVQTENTVVQLFPHQQAKDETLFWKTIDARIKITTPEENIRACNM FT ATDIGDILFLNYKDAMGLPQDPIPFEQALWDSCQAEVQLTYLSKPLAALATAAQRQDPD FT FDSNKIQLFLKSQWVKKVEKMGCLKIKPGQTIASFMQQTVMLYGTMARYMRRIRTSLCP FT PEIMINCETNQTQIGTWVREYWNFNTQSHENDFEAFDQSQDANMLQFELIKAKYHSIPE FT EIIAGYRHLKCNAHIFLGTISIMRLSGEGPTFDANTECSIAYNHTRYFVPKGTAQLYAG FT DDSACASPLSGKPSFQHISPELSLKSKAKIRTQQKGDFATFCGWLITPKGLIKNPTQLY FT ASWLLAKHNKDLADVARNYALDLRIAYQLKDELYELLSPEELDHHQLLVREMIKHKMGH FT LLNLPEGFKTN" FT CDS 5035..5712 FT /codon_start=1 FT /product="25KDa triple gene block protein" FT /note="ORF2; encodes a viral helicase domain" FT /db_xref="GOA:I7DBN1" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:I7DBN1" FT /protein_id="AFO65012.1" FT /translation="MDLPELLLSKNFIRTRLPLTRPIVIHAVAGAGKTQLLEEFARSSP FT STKIYSPVKHHSNSLLLSPFHKALSEASIVDEYPLSRIHENVEYIFADPIQYLGNPNLR FT KPHYICASSHRFGHSTAALLTKLGIETYAHKEDTVRVDNIFQAEPDGQIIACDRPTQEL FT AARHTLDYLRPCESIGLTFPRTTILISHELTADTLTKEIYIGLTRHSNHLLILTPDAST FT TSS" FT CDS 5690..6016 FT /codon_start=1 FT /product="12kDa triple gene block protein" FT /note="ORF3" FT /db_xref="GOA:I7C1I8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:I7C1I8" FT /protein_id="AFO65013.1" FT /translation="MPLQPPPDHTWAFRLLALGAALALLTFTLNRDTSRRVGDPSHSLP FT FGGYYRDGSKVVHYNSPRATKPSTPSFLYLAPILLILLIHAVNRFTNPRHSCSCTHCQP FT IPHT" FT CDS 5943..6125 FT /codon_start=1 FT /product="6.4kDa triple gene block protein" FT /note="ORF4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:I7D868" FT /protein_id="AFO65014.1" FT /translation="MQSIDLLILAILALALIASLFPTPEPCTIVVSGASASVTNCPNPE FT QLAELVRALKPAKPV" FT CDS 6148..7125 FT /codon_start=1 FT /product="34kDa putative capsid protein" FT /note="ORF5; encodes a conserved domain typical of coat FT proteins of potexviruses and carlaviruses" FT /db_xref="GOA:I7CYP3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:I7CYP3" FT /protein_id="AFO65015.1" FT /translation="MSFDYTHPLYRSYPFPHYCEFDRHQLCDHHPVLKPPTHKPSAPNS FT LMSTNDNKGKQPLHPTPPGPNDTTPKPIPVPTPSATPTAAGKENQEPIEKRIIHAFHAE FT AKTHNNGASPPAFNPNNMNAVPLNLLNLNLRYSPVTNSIANPKQTEAIGKAWVRILNID FT PANVFLYAIDLARACADAGSSPEADIIGANEDLNPVVERNALALVVRDFCPLRAFCAYY FT SRVVWNLMIKADQPPANWMKSGVDENAKFAAFDFFHGILSPASLYVPLERHPTSAERIA FT NQAMFAVKIANAPGNGTDLTMDHVAFTKGKTTQSSGLRPTPFNI" FT CDS 6825..7493 FT /codon_start=1 FT /product="putative 23kDa nucleic acid binding protein" FT /note="ORF6; encodes the conserved domain described for the FT nucleic acid binding proteins of ssRNA positive-strand FT viruses, including the zinc finger-like sequence found in FT polypeptides encoded by ORF6 in Carlavirus and Allexivirus" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:I7CB39" FT /protein_id="AFO65011.1" FT /translation="MEPHDQGGPASGQLDEIRGRREREIRGIRLLPWYPLARFPVCAPR FT ETPYFSGEDRKSGHVRCENCQRSRKWHGPHDGPRCLHQRKDYPVLRTPPDPFQHLTTFE FT PILLACLQALKPLSPEIQIAIISCVCDFFNFVRCASSKYQGTSRSAVKRRAARLNYCYK FT CGHPLYLNKPHPCRPGQLCSASISERLCLLHTGPIRFLTENPVSARAAHFLAHELLDPR FT " XX SQ Sequence 7529 BP; 2103 A; 2421 C; 1469 G; 1536 T; 0 other; gaaaagcaaa cagtaacaaa cacacccaaa attgtgatca tcgtctctgc atcaacagct 60 cagctaagaa ccagagaaat ggccactatt aggggtgcca tcgaacgcat tacagacacc 120 accgtacgca ctacacttca agaggaggca tgccgccaaa tacgcgctga acttaaaaac 180 gtcgagcaca tcaaccgtta tgctgtacag cctgacgccg ccgacgcact cgaacaccta 240 ggcattggtt ctaacccctt ctctgtggca ctgcacacgc acggtgcctg caaagcgatt 300 gagaaccaat tactctatgt agttggtacc ttactcccaa aagagcgtgt caccatgccc 360 ttccttaaga aaagcaagct caacatcatg aaacgctgcc ccaaattcca agacatcttc 420 ctgaaccaac acatcgaacc acgtgacgtt tctaggtact gtgactttaa cgtccaatcc 480 acctccacca gcatacccac acgaacggct tacatcagtg acacactcca ctttatggac 540 cgtagagacc tagtccgact atttctaaac agcccaaatc tagagactct ctacgccacc 600 atcgtcctcc cagtcgaggc tgcttacaaa caaccgagcc gctacccaga gatataccag 660 attaactatg acttcgacgg cttccagtac atacctggag gccatggggg cggcgcctac 720 caccacgagt tcgaacagct gcaatggcta gacactggcc atatccactg gcgtgggccc 780 gactgtaaag agattcgcat gacaattacc gcccaaatgc tcgaaagctt aggtgcgaac 840 catcttttct gcttcaaacg tgggaaacta ctcaccccac gtgtacgcac tttcggccga 900 gatacccaag tgctcttgcc caaaatcttc cgcccggccg acaaaaactt taacagggca 960 ataccactaa ccctagctaa caaattactc ctgtacgcta agtccattaa cacagtgacc 1020 ttccgcgacg tcgttgccaa gacacgccaa cttatgaagg acaaggagct tgaaacatac 1080 accggcaacg gcctgttgca tatggccaac tatttcttcg ccgttggagc actgtcagga 1140 gttaactcct atgaccaatt gcttggccta tccgcctggg aagcctgcac ggtccgtatc 1200 aagaacacca taacaaatct ctgggaaaag atcgccggaa agaaagagtt cggcaagcta 1260 ttggaggccc ttgagtggga gacatccacg tactcacgcc aagtgaccga attcaccgtt 1320 acgggactgc ccgcactgct ccccctccca gacatctcag accaagaaga gattttcgcc 1380 cagcaggacg agttagacaa aatcactgcc ggcgctacca agatacggac cattgacatt 1440 atgcggggac aagctaaccg cactaaccca aaaactccga tcaactcaac accagcccag 1500 ggaccccaac tgcccgatac ccgcaatcca atcgaccaag ctgcctctaa agagctcgtc 1560 accaagcttc agaaaaacaa acgcatttat atccaagacg acgggccgga ataccttatg 1620 ggacacatgg ctgaagtccc cgcctggtat cttgaacaag atgataccac cactaggctc 1680 aaaaaccgct gcgcttggtt cttcggccca cccacctaca gatatgggca caacgacatt 1740 gagtacacca ccatagaata ctacccttgg gtcgagcgta ttggggccat ttttggcaag 1800 tacaacacct gtctcgctca aacttacgac gccggagctc gtatcggata ccacgctgac 1860 gacgaagact gctacgaccc tgacgtcacc gtggtcaccg tcaacctcac tgggaacgcc 1920 accttcctgc tcaagacccc aaccggcact aggacctgga aacttaaacc tggtgacttc 1980 atcatcatga aacccggtgc ccaaaggtgc acaaaacatg ccattagaga ttgcacaact 2040 aaccgcacat ccttaacctt tagatggcag gcgcgcactt gccccactaa cctcagaaag 2100 atcactaacc tacccaaagc caccaaccaa ccccaaacca ctgaatggcg tcctgtaacc 2160 aaaccacgcc ctagcaccac cgcttccagt gacacccaga ccccacttgt cacagaccag 2220 gaacaagggc acaccaccac cgccgacgtg acaccaacga ttaggctgcc cgccgaaaat 2280 ggtaataatg ccggtgctgg accctcctcc gcactaaccc tcgccgacct gaatgataac 2340 caagcgccga ccactaacaa agggaaagag aaacttgagg aaatggtcga aactggccca 2400 actatcatgg aacgcttcct caacaccgtt caggaaccaa cacaagattt atgggactcc 2460 acctccgaat ccgctgcgag ctacctcgct gaaggtctcg gtatctccac tgtccaagca 2520 ctcccttggg cacctcactt ggaactcatc aatgcattag gcttccaggg cactgaaagg 2580 cagtacggcc cagacaactg tctcatatgg cccatcacgc attacagaga attgcccaga 2640 agcaacaatg tcgaagcccc tccggaagtg cttgagctgc tcgactgcat caatagatac 2700 cccactgacg tcccaatgct caaaactcga gccgcagcct tcggttcaga cgtcaagaat 2760 ctacgcatag gggagcttgt taagaaccag gacaaacagt ggcgcgcatc actcgcacta 2820 ctttgtgaag aaaatgaaca cctcctccct accactgtaa tacacggcgc tggtggctcc 2880 gggaaatccc atctactcca acagtgggtg gcgtctactg agcgtggaaa tgtagtcacc 2940 atcttgccca ctatcgaact ccttcgagat tggcaaaaca aatgtccaca tgcaccgaaa 3000 gagactttca aaaccttcga aaaagcgctc atccagaaca gcgcccctgt ggttatcatg 3060 gacgactact ccaaacttcc cccggggtac attgaagcct acgtcagcct caagggccag 3120 tgcaaacttc tcatactcac tggagaccct agacaaagcc actaccatga ggagaaccct 3180 gaggccttaa tctccactct tgaccccgcc acggactact ttggcaaatt ttgtgcatac 3240 aacatcaacg ccactcatag aaatgccaaa accttcgcca atgcgcttgg ggtgtactct 3300 gaaaaagaaa tccccaccac tatcacctgc tcatcctacc agaaaagcgg ttggccaaca 3360 cttgtcccat ccatccttaa aagaactgcg ctcaacgaca tggggcagcg ctcgctaacc 3420 tacgcaggct gtcagggact caccacccca aaagtgcaaa tagttcttga caacgccaca 3480 ccactatgct ctgacaaggt gatgtacacc gcactatcta gagcggtgga ccaaattcac 3540 ttcttcaaca ctggcccaaa tcacactgat tactgggaaa agatgaacgc cacacctttc 3600 ctcaaaactt tcatcgacca cacgcgtgag gagaccttcg ctgagcacca acctgccgaa 3660 cccacagtgc gtgagtacgc acccgcaacg catttcccac cggctaacga gaacctagca 3720 ctggagccgt gggtcgaacc gctgactgat aaacactcgc gggagctctt ccactctgcc 3780 ttaggccaca gcaactgcgt ccagactgaa aacaccgtag tccaactttt cccccaccaa 3840 caggccaaag acgaaacact cttctggaaa acaatagacg ccagaatcaa gataaccacc 3900 ccggaagaga acatcagggc ttgcaacatg gccactgaca ttggcgacat cttgttccta 3960 aattacaaag atgccatggg gttaccacaa gaccccatac ccttcgaaca agcactctgg 4020 gactcttgtc aagccgaggt gcaactaacc tacctcagca agcctctggc agcactcgct 4080 actgccgccc aaagacaaga ccccgacttt gactccaaca aaatccaact cttcctgaaa 4140 tcacaatggg tcaagaaagt cgagaagatg ggctgcctta agatcaaacc cggccaaact 4200 attgcttcct tcatgcagca gactgttatg ctatacggaa ctatggctcg gtacatgcgc 4260 cgcatccgca cctcactttg cccacccgaa attatgatca actgcgagac caaccaaacc 4320 caaatcggaa catgggtgcg tgagtattgg aacttcaaca cccagagcca tgagaacgac 4380 tttgaagcgt tcgaccagtc ccaagacgcc aacatgttac aattcgagct cattaaggcc 4440 aaataccact caatccccga ggagattatc gccgggtatc gacacctgaa atgcaacgct 4500 cacatcttcc ttgggactat atcgatcatg aggttgtccg gtgaagggcc gaccttcgac 4560 gccaacacag agtgttccat tgcatacaac cacacaaggt attttgtgcc gaaaggcacc 4620 gcacagctct acgccggaga cgactctgca tgcgcgtcac ccctctctgg aaaacccagc 4680 ttccaacata tctcacccga gctcagcctc aagtctaagg ccaaaattag aacccaacag 4740 aaaggagact ttgcaacctt ctgtggctgg ctcatcactc caaaaggcct gatcaaaaac 4800 cccacccagc tttacgcctc ctggctattg gctaagcaca acaaagacct tgcggacgtg 4860 gccagaaact atgccttgga cttacgcatt gcctatcaac ttaaagacga gctctatgag 4920 ttattatcac ccgaagaact tgaccaccac caactgctcg tccgagagat gatcaagcac 4980 aaaatgggcc atctcctcaa cctccctgag gggtttaaaa caaactaact cgaaatggac 5040 ttacctgagc tcctgctatc caaaaacttc attcgcactc gcttacccct caccagaccc 5100 attgtcatac acgctgttgc cggcgccggc aagacacaac ttcttgaaga attcgcgcgg 5160 tcctcaccct caaccaaaat ctactcacct gtgaaacatc actccaattc actgctgctc 5220 tcgcccttcc acaaagctct ctctgaagct tccatcgtcg acgagtaccc tctaagccgg 5280 atacacgaga acgtcgagta catcttcgct gaccccatcc aataccttgg taacccaaac 5340 cttagaaaac cccactacat ctgcgcgtct tcccatcgat tcggccattc caccgctgcc 5400 ctcctaacaa aacttggcat cgaaacttac gcacataaag aagataccgt ccgggtagat 5460 aacatcttcc aggctgaacc agacggccaa atcatcgcct gcgaccgacc cactcaagag 5520 cttgctgcca gacacacact agactacttg aggccctgcg aaagcatagg actaactttc 5580 ccacgaacca caatcctgat ctctcacgaa cttactgctg acaccctcac caaagagatt 5640 tacatcggtt tgacccgcca ctctaaccac cttctcatac tcactccgga tgcctctaca 5700 acctcctcct gaccatactt gggctttccg actactagct cttggcgccg ccttagcact 5760 gctcactttt acgctcaacc gagacacaag tcgtcgcgtc ggagatccct ctcactcact 5820 tccttttgga gggtactacc gagacggcag caaagtagtc cactataact ccccgagagc 5880 cacaaaacct agcacccctt ccttcctgta cctggcccca atcttactga ttttactaat 5940 tcatgcagtc aatagattta ctaatcctcg ccattcttgc tcttgcactc attgccagcc 6000 tattccccac acctgaacct tgcacaattg tagtctctgg tgcctcagcc tccgtaacta 6060 attgcccaaa ccccgaacaa ctcgcagagc tagtcagagc gcttaaaccg gctaaaccgg 6120 tttaaaactt aacacaaact cgaactcatg agcttcgact acactcaccc tctttaccgc 6180 agctatccat ttccacatta ctgcgagttc gaccggcacc aactctgcga ccatcatcca 6240 gtactcaaac ctccaactca caaacccagt gccccgaact ctctcatgtc taccaacgac 6300 aacaagggca aacaaccact tcacccgaca cctccgggcc ctaacgacac gaccccgaaa 6360 cctatccccg tgcccactcc ctcagctaca cccacagctg caggtaagga aaaccaagag 6420 cccatcgaaa agcgtatcat acacgctttc cacgctgaag caaaaaccca caacaatggg 6480 gcctctccac ctgcctttaa cccgaacaat atgaatgctg tgccgttgaa cctgctcaac 6540 ctcaacctaa gatactcacc ggtcactaac tccatagcta accctaaaca gaccgaggct 6600 atcgggaaag cttgggtccg catcttgaac atcgatcctg ccaacgtgtt cctatacgcc 6660 attgacctcg ccagagcttg cgccgacgcg ggctcttctc ctgaagctga tattatcgga 6720 gcaaacgaag atctcaaccc cgttgttgaa cgaaacgcat tggcgctagt ggttcgggat 6780 ttctgcccgc tgcgcgcttt ttgcgcttac tactctcgag tggtatggaa cctcatgatc 6840 aaggcggacc agcctccggc caactggatg aaatccgggg tagacgagaa cgcgaaattc 6900 gcggcattcg acttcttcca tggtatcctc tcgcccgctt ccctgtatgt gcccctagag 6960 agacacccta cttcagcgga gaggatcgca aatcaggcca tgttcgctgt gaaaattgcc 7020 aacgctccag gaaatggcac ggacctcacg atggaccacg ttgccttcac caaaggaaag 7080 actacccagt cctccggact ccgcccgacc cctttcaaca tctaaccacc tttgaaccaa 7140 tactcctagc gtgcttacaa gccctcaaac cactttcccc cgaaatccaa atagctatca 7200 tttcgtgtgt gtgtgacttc tttaatttcg tacgctgtgc cagtagcaag taccagggca 7260 ccagccgctc agctgtcaaa cgtcgagcgg ctcgcctgaa ctactgctac aagtgtgggc 7320 accccttata tctaaataaa cctcacccct gccgaccagg tcaattgtgc tctgcatcta 7380 tctccgagcg cctctgtttg ctccacacag gaccgattag gtttctaacc gaaaatcctg 7440 ttagtgccag agcggctcac ttcctagcgc atgagctcct tgaccccaga tgaaacataa 7500 atattcaggc tttcagtttc cattttctg 7529 //