Dbfetch

Dbfetch

ID   JX025999; SV 1; linear; genomic RNA; STD; VRL; 1883 BP.
XX
AC   JX025999;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Ajs4 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1883
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1883
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
DR   MD5; 7c58c4096c91eba275a2ce3a9e2c861f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1883
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="tomato"
FT                   /isolate="Ajs4"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:12305"
FT   gene            1..840
FT                   /gene="3a"
FT   CDS             1..840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0V9"
FT                   /protein_id="AGG16154.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHSRIASFFKSGYDVGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCASLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNSIESSQYVLTDSKINQNARSESEDLNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   gene            1139..1795
FT                   /gene="3b"
FT   CDS             1139..1795
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:R4J0T8"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0T8"
FT                   /protein_id="AGG16155.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDMSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1883 BP; 441 A; 442 C; 449 G; 551 T; 0 other;
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac        60
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       120
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       180
     gaagtaaccc atagtcgtat tgcttccttc tttaagtctg gatatgatgt cggtgaattg       240
     cgctctaaag gctatatgag cgtccctcaa gtgttgtgtg ctgttactcg aacggtttct       300
     actgatgccg agggatcttt gagaatttac ctggctgatc taggcgataa ggagttatct       360
     cctatagatg gacaatgcgc atcattgcat aaccatgatc ttcccgcttt ggtgtcattc       420
     caaccgacgt atgactgtcc tatggagact gttgggaatc gtaagcggtg ttttgctgtc       480
     gttatcgaaa ggcatggtta tattgggtat accggtacca cagcaagcgt gtgtagtaat       540
     tggcaagcac ggttttcttc taagaacaac aactacactc atatcgctgc tgggaagact       600
     ctagtactgc cattcaacag attagctgag caaacgaaac cgtcagccgt cgctcgcctg       660
     ttgaagtcgc aattgaatag catagaatct tcgcaatacg tcttgacgga ttcgaagatt       720
     aatcaaaatg cgcgcagtga gtccgaggat ttgaatgttg aaagccctcc catcgcaatc       780
     gggagttctt ccgcgtcccg ctccgaaacc ttcagaccgc aggtggttaa cggtctttag       840
     tgatttcggt gcgtattagt atataagtat tgtgagtctg cacataatat tatatctata       900
     gtgtcctgtg tgagttggta cagtagacaa ctgtgacgcg atgttgtgtt gagaagagag       960
     cacatctggt tcagtaaacc cacataataa ctttgaggtt caattcctct tgttccctga      1020
     tgggtccctt tacttttcat ggatgcttct ccacgagatt gcgtttcgtc tactgaatct      1080
     agagagtatt gtgctgtgat tttctctttc gtgttgtaga tttgagtcga gtcgagtcat      1140
     ggacaaatct gaatcaacca gtgctggtcg taaccgtcgt cgtcgtccgc gtcgtggttc      1200
     ccgctccgct tcctcctccg cggatgctac gtttagagtc ttgtcgcaac agctttcgcg      1260
     acttaataag acgttagcag ctggtcgtcc tactattaac cacccaacct ttgtgggtag      1320
     tgagcgctgt aaacctggtt acacgttcac atcgattacc ctgaagccac cgaaaataga      1380
     ccgtgggtct tattatggta aaaggttgtt gcttcctgat tcagtcactg agttcgataa      1440
     gaagcttgtt tcgcgcattc aaattcgagt taatcctttg ccgaaatttg attctaccgt      1500
     gtgggtgaca gtccgtaaag ttcctgcctc ctcggacatg tccgttgccg ccatctctgc      1560
     tatgttcgcg gacggagcct caccggtact ggtttatcag tacgccgcat ccggagtcca      1620
     agctaacaac aaactgttgt atgatctttc ggcgatgcgc gctgatattg gcgacatgag      1680
     aaagtacgcc gtactcgtgt attcaaaaga cgatgcactc gagacggatg aactggtact      1740
     tcatgtcgac atcgagcacc aacgtattcc cacatctggg gtgctcccag tttgaatcgt      1800
     gttttccaga accctccctc cgatttctgt ggcgggagct gagttggcag ttctgctata      1860
     aactgtctga agtcactaaa cgc                                              1883
//