Dbfetch

Dbfetch

ID   JX025995; SV 1; linear; genomic RNA; STD; VRL; 1890 BP.
XX
AC   JX025995;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Esf172 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1890
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1890
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
DR   MD5; 8b70cf2b6b98715faebfbd6bd2763d6d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1890
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="tomato"
FT                   /isolate="Esf172"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Esfahlan"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:12305"
FT   gene            1..840
FT                   /gene="3a"
FT   CDS             1..840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0T7"
FT                   /protein_id="AGG16150.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHSRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTEAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAIARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEDFNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   gene            1145..1801
FT                   /gene="3b"
FT   CDS             1145..1801
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:R4J0N2"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0N2"
FT                   /protein_id="AGG16151.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADATFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLHDLSAMRADIGDMRKYAVLVYSKDDGLETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1890 BP; 451 A; 447 C; 441 G; 551 T; 0 other;
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac        60
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       120
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       180
     gaagtaaccc atagtcgcat tgcttctttc tttaagtctg gatatgatgt cggtgaattg       240
     tgctctaaag gctatatgag cgtccctcaa gtgttatgtg ctgttactcg aacggtttct       300
     actgaggctg agggatcttt gagaatttat ttggctgatc taggcgataa ggagttatct       360
     cctatagatg gacaatgcgt atcattacat aaccatgatc ttcccgcttt agtgtcattc       420
     caaccgacgt atgattgtcc tatggagact gttgggaatc gtaagcggtg ttttgctgtc       480
     gttatcgaaa ggcatggtta tattgggtat accggcacca cagcaagcgt gtgtagtaac       540
     tggcaagcac ggttttcttc taagaacaac aactacactc atatcgctgc tgggaagact       600
     ctagtactgc cattcaacag attagctgag caaacgaaac cgtcagccat cgctcgcctg       660
     ttgaagtcgc aattgaataa catagaatct tcgcaatacg tcttgacgga ttcgaagatt       720
     aatcaaaatg cgcgcagtga gtccgaggat tttaatgttg aaagccctcc catcgcaatc       780
     gggagttctt ccgcgtcccg ctccgaaacc ttcagaccgc aggtggttaa cggtctttag       840
     tactttgcgt gcgtattagt atataagtat ttgtgagtct gcacataata actatatcta       900
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgttgtg ttgagaagag       960
     aacacatctg gttcagtaaa cccacatcat aactttgagg ttcaattcct cttgctccct      1020
     gatgggtccc ttactttctc acggatgctt ctccacgaga ttgcgttatt cgtctactga      1080
     tatcctagag agtagttgtg ctgtgttttc tctttcgtgt cgtagaattg agtcgagtcg      1140
     agtcatggac aaatctgaat caaccagtgc tggtcgtaac cgtcgtcgtc gtccgcgtcg      1200
     cggttcccgc tccgcttcct cctccgcgga tgctacgttt agagtcttgt cgcaacagct      1260
     ttcgcgactt aataagacgt tagcagctgg tcgtcctact attaaccacc caacctttgt      1320
     gggtagtgaa cgctgtaaac ctggatacac gttcacatcg attaccctga agccaccaaa      1380
     aatagaccgt gggtcttatt atggtaaaag gttgttactt cctgattcag tcactgagtt      1440
     cgataagaag cttgtttcgc gcattcaaat tcgagttaat cctttgccga aatttgattc      1500
     taccgtgtgg gtgacggtcc gtaaagttcc tgcctcctcg gacctgtccg ttgccgccat      1560
     ctctgctatg ttcgcggacg gagcctcacc ggtactggtt tatcagtacg ccgcatccgg      1620
     agtccaagct aacaacaaac tgttgcatga tctttcggcg atgcgcgctg atattggcga      1680
     catgagaaag tacgccgtac tcgtgtattc aaaagacgat ggactcgaga cggatgaact      1740
     agtacttcat gtcgacattg agcaccaacg tattcccaca tctggggtgc tcccagtttg      1800
     attccgtgtt ttccagaacc ctccctccga tttctgtggc gggagctgag ttggcagtgt      1860
     tgctataaac tgtctgaagt cactaaacgc                                       1890
//