ID   JX025994; SV 1; linear; genomic RNA; STD; VRL; 1880 BP.
XX
AC   JX025994;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Jol186 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1880
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1880
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
DR   MD5; a3832aa96351d7c5e22bccfcc2a4dd11.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1880
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="muskmelon"
FT                   /isolate="Jol186"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Jolfa"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:12305"
FT   gene            1..840
FT                   /gene="3a"
FT   CDS             1..840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q70WE9"
FT                   /protein_id="AGG16148.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   gene            1135..1791
FT                   /gene="3b"
FT   CDS             1135..1791
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q76U37"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q76U37"
FT                   /protein_id="AGG16149.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1880 BP; 447 A; 441 C; 443 G; 549 T; 0 other;
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac        60
     gatcttcaaa agatactatt tagccctgaa gccattaaga agatggctac tgagtgtgac       120
     ctaggccggc atcactggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       180
     gaagtaaccc acggtcgtat tgcttccttc tttaagtctg gatatgatgt tggtgaattg       240
     tgctcaaaag gatacatgag tgtccctcaa gtgttatgtg ctgttactcg aacagtttcc       300
     actgatgctg aagggtcttt gagaatttac ctagctgatt taggcgacaa ggagttatct       360
     cccatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc       420
     caaccgacgt atgattgtcc tatggagaca gttgggaatc gtaagcggtg ttttgctgtc       480
     gttatcgaaa gacatggtta tattgggtat accggtacca cagctagcgt gtgtagtaat       540
     tggcaagcaa ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact       600
     ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt cgctcgcctg       660
     ttgaagtcgc aattgaacaa cattgaatct tcgcaatatt tgttaacgaa cgcgaagatt       720
     aatcaaaatg cgcgcagtga gtccgaggat ttaaatgttg agagccctcc cgccgcaatc       780
     gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag       840
     cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata       900
     gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggaa       960
     cacatctggt tttagtaagc ctacatcata gttttgaggt tcaattcctc tactccctgt      1020
     tgagcccctt actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta      1080
     ttagagagtg tgtgctgtgt tttctctttt gtgtcgtaga attgagtcga gtctatggac      1140
     aaatctgaat caaccagtgc tggtcgtaat cgtcgacgtc gtccgcgtcg tggttcccgc      1200
     tccgccccct cctccgcgga tgctaacttt agagtcttgt cgcagcagct ttcgcgactt      1260
     aataagacgt tagcagctgg tcgtccaact attaaccacc caacctttgt agggagtgaa      1320
     cgctgtagac ctgggtacac gttcacatct attaccctaa agccaccaaa aatagaccgt      1380
     gggtcttatt acggtaaaag gttgttgcta cctgattcag tcacggaata tgataagaag      1440
     cttgtttcgc gcattcaaat tcgagttaat cctttgccga aatttgattc taccgtgtgg      1500
     gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgccat ctctgctatg      1560
     ttcgcggacg gagcctcacc ggtactggtt tatcagtacg ccgcatctgg agtccaagcc      1620
     aacaacaaat tgttgtatga tctttcggcg atgcgcgctg atataggtga catgagaaag      1680
     tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagct agtacttcat      1740
     gttgacatcg agcaccaacg cattcccaca tctggggtgc tcccagtttg attccgtgtt      1800
     ttccagaatc ctccctccga tttctgtggc gggagctgag ttggcagttc tgctataaac      1860
     tgtctgaagt cactaaacgt                                                  1880
//