ID   JX025993; SV 1; linear; genomic RNA; STD; VRL; 1797 BP.
XX
AC   JX025993;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Khn1 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1797
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1797
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
DR   MD5; ac2c3d3b90396e4303ce9b8345e07c16.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1797
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="tomato"
FT                   /isolate="Khn1"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Khodafarin"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:12305"
FT   gene            1..840
FT                   /gene="3a"
FT   CDS             1..840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0N1"
FT                   /protein_id="AGG16146.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHSRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTEVE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAIARLLK
FT                   SQLNNIESSQYRLTDSKINQNARSESEDLNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   gene            1141..1797
FT                   /gene="3b"
FT   CDS             1141..1797
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:R4J0S5"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:R4J0S5"
FT                   /protein_id="AGG16147.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSSDATFRVLWQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTLRKVPASSDMSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVHSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1797 BP; 428 A; 420 C; 418 G; 531 T; 0 other;
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac        60
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       120
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       180
     gaagtaaccc atagtcgtat tgcttccttc tttaagtctg gatatgatgt cggtgaattg       240
     tgctctaaag gttacatgag cgtccctcaa gtgttatgtg ctgttactcg aacggtttct       300
     actgaggttg agggatcttt gagaatttac ctggctgatc taggcgataa ggagttatct       360
     cctatagatg gacaatgcgt atcattacat aaccatgatc ttcccgcttt agtgtcattc       420
     caaccgacgt atgattgtcc tatggagact gttgggaatc gtaagcggtg ttttgctgtt       480
     gttatcgaaa ggcatggtta tattgggtat accggcacca cagcaagcgt gtgtagtaat       540
     tggcaagcac ggttctcttc taagaacaac aactacactc atatcgctgc tgggaagact       600
     ctagtactgc cattcaacag attagctgag caaacgaaac cgtcagccat cgctcgcctg       660
     ttgaagtcgc aattgaataa cattgaatct tcgcaatatc gtttgacgga ttcgaagatt       720
     aatcaaaatg cgcgcagtga gtccgaggat ttgaatgttg aaagccctcc catcgcaatc       780
     gggagttctt ccgcgtcccg ctccgaaacc ttcagaccgc aggtggttaa cggtctttag       840
     taatttcgtt gcgtattagt atataagtat ttgtgagtct gtacataata ctatatctat       900
     agtgtcctgt gtgagttgat acagtagaca actgtgacgc gatgttgtgt tgagaagaga       960
     gcacatctgg ttcagtaaac ccacatcata actttgaggt tcaattcctc ttgttccctg      1020
     atgggtccct ttacttttca cgatgcttct ccacgagatt gcgtttcgtc tacttatcct      1080
     aagagtactg gtgccgtgat tttctccttt ctgtgtgtta gatttgagtc gagtcgagtc      1140
     atggacaaat ctgaatcaac cagtgctggt cgtaaccgtc gtcgtcgtcc gcgtcgcggt      1200
     tcccgctccg cttcctcctc ctcggatgct acgtttagag tcttgtggca acagctttcg      1260
     cgacttaata agacgttagc agctggtcgt cctactatta accacccaac ctttgtgggt      1320
     agtgagcgtt gtaaacctgg atacacgttc acatcgatta ccctgaagcc accgaaaata      1380
     gaccgtgggt cttattatgg taaaaggttg ttgcttcctg attcagtcac tgagttcgat      1440
     aagaagcttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt tgattctacc      1500
     gtgtgggtga cgctccgtaa agttcctgcc tcctcggaca tgtccgttgc cgccatctct      1560
     gctatgttcg cggacggagc ctcaccggta ctggtttatc agtacgccgc atccggagtt      1620
     caagctaaca acaaactgtt gtatgatctt tcggcgatgc gcgctgatat tggcgacatg      1680
     agaaagtacg ccgtactcgt gcattcaaaa gacgatgcac tcgagacgga tgaactagta      1740
     cttcatgtcg acatcgagca ccaacgtatt cccacatctg gggtgctccc agtttga         1797
//