ID   JX025990; SV 1; linear; genomic RNA; STD; VRL; 1883 BP.
XX
AC   JX025990;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate Zdj31 movement protein (3a) and coat protein
DE   (3b) genes, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1883
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   "Molecular characterization of Cucumber mosaic virus isolates on the basis
RT   of CP, MP and 2b genes reveals evidence of phylogenetic position and
RT   symptomolgy";
RL   Unpublished.
XX
RN   [2]
RP   1-1883
RA   Nematollahi S., Sokhandan Bashir N., Rakhshandehroo F., Zamanizadeh H.;
RT   ;
RL   Submitted (07-MAY-2012) to the INSDC.
RL   Plant Pathology, Azad University, College of Agriculture and Natural
RL   Resources, Science and Research Branch, Tehran, Iran
XX
DR   MD5; c95f2a0de3cbc3774a4d143587264eac.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1883
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /host="cucumber"
FT                   /isolate="Zdj31"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Zanjirabad"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:12305"
FT   gene            1..840
FT                   /gene="3a"
FT   CDS             1..840
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q787R2"
FT                   /protein_id="AGG16140.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   gene            1139..1795
FT                   /gene="3b"
FT   CDS             1139..1795
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9YJR3"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YJR3"
FT                   /protein_id="AGG16141.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LSAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ   Sequence 1883 BP; 451 A; 438 C; 442 G; 552 T; 0 other;
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac        60
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       120
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       180
     gaagtaaccc acggtcgtat tgcttccttc tttaaatctg gatatgatgt tggtgaattg       240
     tgctcaaaag gatatatgag cgtccctcag gtgttgtgtg ctgttactcg aacggtttcc       300
     actgatgctg aagggtcctt gagaatttac ttagctgatc taggtgacaa ggagttatct       360
     cctatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc       420
     caaccgacgt atgattgtcc tatggaaaca gttgggaatc gcaagcggtg ttttgctgtc       480
     gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt gtgtagtaat       540
     tggcaagcaa ggttttcttc taagaataac aactacactc atatcgcagc tgggaagact       600
     ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt tgctcgcctg       660
     ttgaagtcgc aattgaacaa cattgaatct tcgcaatatc tgttaacgaa tgcgaagatt       720
     aatcagaatg cgcgcagtga gtccgaggaa ttaaatgttg agagccctcc cgccgcaatc       780
     gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag       840
     cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata       900
     gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggag       960
     cacatctggt tttagtaagc ctacatcaca gttttgaggt tcaattcctc ttactccctg      1020
     ttgagcccct tactttctca tggatgcttc tccgcgcaga ttgcgttatt gtctactgac      1080
     tatatagaga gtgtgtgtgc tgtgttttct cttttgtgtc gtagaaatga gtcgagtcat      1140
     ggacaaatct gaatcaacca gtgctggtcg taaccgtcga cgtcgtccgc gtcgtggttc      1200
     ccgctccgcc ccctcctccg cggatgccaa ctttagagtc ttgtcgcaac agctttcgcg      1260
     acttaataag acgttgtcag ctggtcgtcc aactattaac cacccaacct ttgtagggag      1320
     tgagcgttgt aaacctggat acacgttcac atctattacc ctaaagccac cgaaaataga      1380
     ccgtgggtct tattatggta aaaggttgtt attacctgat tcagtcacag aatatgataa      1440
     gaaacttgtt tcgcgcattc aaattcgagt taatcctttg ccgaaatttg attctaccgt      1500
     gtgggtgaca gtccgtaaag ttcctgcctc ctcggactta tccgttgccg ccatctctgc      1560
     tatgtttgcg gacggagcct caccggtact ggtttatcag tatgctgcat ctggagtcca      1620
     agctaacaac aaattgttgt atgatctttc ggcgatgcgc gctgatatag gcgacatgag      1680
     aaagtacgcc gtcctcgtgt actcaaaaga cgatgcactc gagacggacg agctagtact      1740
     tcatgttgac gtcgagcacc aacgcattcc cacgtctggg gtgctcccag tataattctg      1800
     tgttttccag aaccctccct ccgatttctg tggcgggagc tgagttggca gttctgctat      1860
     aaactgtctg aagtcactaa acg                                              1883
//