ID JX025360; SV 1; circular; genomic DNA; STD; VRL; 2789 BP. XX AC JX025360; XX DT 29-JUL-2012 (Rel. 113, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 3) XX DE Jatropha mosaic Nigerian virus isolate 5 segment DNA-A, complete sequence. XX KW . XX OS Jatropha mosaic Nigeria virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2789 RX DOI; 10.1007/s00705-012-1512-7. RX PUBMED; 23074041. RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT "Molecular identification of a new begomovirus associated with mosaic RT disease of Jatropha curcas L. in Nigeria"; RL Arch. Virol. 158(2):511-514(2013). XX RN [2] RP 1-2789 RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT ; RL Submitted (02-MAY-2012) to the INSDC. RL Department of Agroecology, Aarhus University, Forsogsvej 1, Slagelse 4200, RL Denmark XX DR MD5; d467896ead3a87adf3f7d28c7d6c5dff. XX FH Key Location/Qualifiers FH FT source 1..2789 FT /organism="Jatropha mosaic Nigeria virus" FT /segment="DNA-A" FT /host="Jatropha curcas L." FT /isolate="5" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="2011" FT /db_xref="taxon:1213406" FT CDS 146..460 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:I7B348" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I7B348" FT /protein_id="AFO38444.1" FT /translation="MWDPLRNEFPETLHGFRCMLAVKFLQALVETYSPDTKGYEYIRDL FT ICILRSRHYNEANIRYGLLVSRIQCTPASELRESSGFTCSCEHCPRHSKKTGLEKQAHV FT " FT CDS 309..1082 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:I7AHJ8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7AHJ8" FT /protein_id="AFO38445.1" FT /translation="MKRTYDMAFLSPVSNVRRRLNFGSPLALPAPASTAPGIPRRRAWK FT NRPMYRKPRFYRTFRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYLACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1079..1483) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer" FT /db_xref="GOA:I7BBW1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7BBW1" FT /protein_id="AFO38448.1" FT /translation="MDSRTGEYITAPQAGNGVFIWEINNPRYFTTTEQSVRPFNTNHDI FT ITLQIRFNHNLRKELGLHKCYLNFRVWTTSQTRSGTFLRVFKTQVLKYLDMLGVISINN FT VIRSVDHVLHNVIRTCIEVQEFHEIKFKFY" FT CDS complement(1224..1631) FT /codon_start=1 FT /product="C2" FT /note="transcriptional activator protein" FT /db_xref="GOA:I7A6S0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7A6S0" FT /protein_id="AFO38447.1" FT /translation="MRNSSPSASHSTPVPIKVKHRLAKTKRIRRRRIDLECGCSYYLHI FT NCASHGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGTERAAIQHQPRHHHPPDPIQPQ FT PPEGTGSSQVLSELPSLDDFTDSIWDFLESI" FT CDS complement(1540..2622) FT /codon_start=1 FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:I7BFC4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7BFC4" FT /protein_id="AFO38446.1" FT /translation="MPHAPKKFQINCKNLFLTYPQCSLSKEETLSQLTKLSLPSNPKFI FT RICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAY FT LEKDGDVLDWGQFQIDGRSARGGKHSTNDAYAQALNAGNKSEALRLIKELAPKDYVLQF FT HNLNSNLERIFSPPVEIYKSPFLSSSFDQVPDELEEWVADNVKAAAARPWRPNSIVIEG FT DSRTGKTMWARSLGPHNYLCGHLDISHKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNSALKRWALHNAKFITLSEP FT LYSGTNQSQAQTREDQENTS" FT CDS complement(2205..2462) FT /codon_start=1 FT /product="C4" FT /note="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7B352" FT /protein_id="AFO38449.1" FT /translation="MGNLICMSSCNSRAKSDSRIADCSTWYPQPGQHISIQTFRELNLA FT PMSRHILRRTGTSSTGANSRSMVDLREEENTQQTMLTHRR" XX SQ Sequence 2789 BP; 690 A; 606 C; 690 G; 803 T; 0 other; accggatggc cgcgcgatac ccgctcattg tgggccatgt aggtcccatt ggacaagacc 60 tgtcggccac tcaggatgcg tctgttgagg ttagatatgt gtggtcccag gatataactt 120 cgtcacgaag ttggtgagtc acacaatgtg ggacccttta agaaatgaat ttccagaaac 180 ccttcatggg tttcgttgta tgttggctgt gaagtttttg caggccctgg tggagacgta 240 cagcccggat acgaagggat acgaatacat acgggatctt atatgtattc tacgctcgcg 300 acattacaat gaagcgaaca tacgatatgg ccttcttgtc tcccgtatcc aatgtacgcc 360 ggcgtctgaa cttcgggagt cctctggctt tacctgctcc tgcgagcact gcccccggca 420 ttccaagaag acgggcctgg aaaaacaggc ccatgtatag gaagcccagg ttctaccgga 480 cgtttaggag cccagacgtc cctcgtggat gtgaaggccc atgtaaggtc cagtcctatg 540 agcaacgcga tgatgtgaaa cacaccggtg ttgttcggtg tgttagtgat gttacccgtg 600 gttctggtat tacccatcgg gtaggtaagc gtttctgcat caagtctatc tatattctcg 660 ggaagatctg gatggatgag aatatcaaga agcagaacca cacgaaccag gtgatgttct 720 atttggtgcg tgatcgtaga ccctatggga cgagtccaat ggattttgga caagtgttta 780 acatgtttga caacgagccg tcaacggcca ctgtgaagaa cgatctgcga gatcgcttcc 840 aggtgctacg gaagttctat gctactgtca ctggtggtcc gtcgggaatg aaggaacagg 900 ctttagttaa gaggttcttt aggattaaca atcatgttgt ttacaaccat caggaacagg 960 cgaagtatga gaaccatact gagaacgcct tgttattgta tttggcatgt acgcatgcct 1020 cgaatcccgt gtatgcaacg ctgaagatac gcatctattt ttacgatgcc gtcacgaatt 1080 aataaaattt aaattttatt tcatgaaatt cctgaacttc gatacaagtc ctaattacat 1140 tatgtaatac atgatcgaca gatctaataa cattattaat ggaaattaca cctaacatgt 1200 ctaagtattt aaggacttgg gttttaaata ctctcaagaa agtcccagat cgagtctgtg 1260 aagtcgtcca gactcggaag ttcagataac acttgtgaag acccagttcc ttccggaggt 1320 tgtggttgaa tcggatctgg agggtgatga tgtcgtggtt ggtgttgaat ggccgcacgc 1380 tctgttccgt ggtcgtgaaa tatcggggat tgtttatctc ccagataaac acgccattcc 1440 ctgcttgagg agcagtgatg tactccccgg tgcgtgaatc catggctagc acagttgata 1500 tgtagatagt atgagcagcc gcactcgaga tcgatgcgtc tacgacgtat tctcttggtc 1560 ttcgcgagtc tgtgcttgac tttgattggt accggagtag agtggctcgc tgagggtgat 1620 gaatttcgca ttgtgtaatg cccaccgctt caaagctgag ttcttctctt catccaagaa 1680 ctctttatag gacgaagtcg ggccaggatt gcagaggaag attgtcggga tcccgccttt 1740 aatttgaatt ggcttgccgt atttcgtgtt gctttgccaa tcacgctggg cccccatgaa 1800 ctccttgaaa tgctttagat agtgcggatc cacgtcatcg atgatgttgt accaggcgtc 1860 atttgaatag accttgtgac taatgtccaa atgaccacat aagtaattat gtggacccag 1920 gcttcgtgcc cacattgttt tgcccgtacg actatcgccc tcgataacaa tactgttagg 1980 tctccatggc cgcgcagcgg ctgccttcac attgtctgcc acccactcct caagttcgtc 2040 cggaacttga tcaaacgaag aggacagaaa aggagattta taaatctcta cgggaggact 2100 gaatatcctc tctaaatttg aattaagatt atgaaattgt aatacataat cctttggggc 2160 taattcttta attagccgta gagcttcaga cttattgcct gcgttcagcg cctgtgcgta 2220 agcatcgttt gttgagtgtt ttcctcctct cgcagatcga ccatcgatct ggaattggcc 2280 ccagtcgagg acgtccccgt ccttctcaag atatgccttg acatcggagc tagatttagc 2340 tccctgaatg tttggatgga aatgtgctga cctggttggg gataccaagt cgaacaatct 2400 gcaattcgtg agtcggactt tgccctcgaa ttgcacgagg acatgcagat gaggttcccc 2460 attttgatgc agttctctgc agattcttat gaatttgggg ttggaaggaa gtgatagctt 2520 ggttaattgc gaaagagtct cctctttcga taacgagcac tgcggatatg taagaaataa 2580 gttcttacaa ttaatttgga attttttggg ggcgtgaggc atgttgactt tgtttgggta 2640 cccttgaccg ctctcgtcta attctcgggt gcaattgtat tggtacccat atataggggg 2700 ggtaccaaat ggcacgcttg taatttgttc aactttacta ttgaaattca attttcaaaa 2760 ttcccactag cggccatccg tataatatt 2789 //