ID JX025358; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC JX025358; XX DT 29-JUL-2012 (Rel. 113, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 3) XX DE Jatropha mosaic Nigerian virus isolate 2 segment DNA-A, complete sequence. XX KW . XX OS Jatropha mosaic Nigeria virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX DOI; 10.1007/s00705-012-1512-7. RX PUBMED; 23074041. RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT "Molecular identification of a new begomovirus associated with mosaic RT disease of Jatropha curcas L. in Nigeria"; RL Arch. Virol. 158(2):511-514(2013). XX RN [2] RP 1-2781 RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT ; RL Submitted (02-MAY-2012) to the INSDC. RL Department of Agroecology, Aarhus University, Forsogsvej 1, Slagelse 4200, RL Denmark XX DR MD5; 36d23d1aa77718aae7e3fda92413cbbe. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Jatropha mosaic Nigeria virus" FT /segment="DNA-A" FT /host="Jatropha curcas L." FT /isolate="2" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="2011" FT /db_xref="taxon:1213406" FT CDS 138..479 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:I7A6Q6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I7A6Q6" FT /protein_id="AFO38432.1" FT /translation="MWDPLRNEFPETLHGFRCMLAVKFLQALVDSYSPDTKGYEYIRDL FT ICILRSRHYNEANIRYGLLVSRIQCTPASQLRESSGVTCSCEHCPRHFKKTGLEKQAHE FT QEAQVLPDV" FT CDS 301..1074 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:I7BBV1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7BBV1" FT /protein_id="AFO38433.1" FT /translation="MKRTYDMAFSSPVSNVRRRLNFGSPLALPAPASTAPGTSRRRAWR FT NRPMNRKPRFYRTFRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYLACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1071..1475) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer" FT /db_xref="GOA:I7BFB9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7BFB9" FT /protein_id="AFO38436.1" FT /translation="MDSRTGEYITAPQAGNGVFIWEINNPLYFTTTEQSVRPFNTNHDI FT ITIQIRFNHNLRKELGLHKCYLNFRIWTTSQTRSGTFLRVFKYQVLKYLDMLGVISINN FT VIRSVDHVLHNVIRTCIEVQEFHEIKFKFY" FT CDS complement(1216..1623) FT /codon_start=1 FT /product="C2" FT /note="transcriptional activator protein" FT /db_xref="GOA:I7AHJ1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7AHJ1" FT /protein_id="AFO38435.1" FT /translation="MQHSSPSVSHSTPVPIKVKHRIAKTKRIRRRRIDLECGCSYYLHL FT NCANHGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGAERAAIQHQPRHHHHPDPVQPQ FT PPEGTGSSQVLSELPNLDDFTDSVWDFLESI" FT CDS complement(1532..2614) FT /codon_start=1 FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:I7B340" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7B340" FT /protein_id="AFO38434.1" FT /translation="MPNAPKKFQINCKNLFLTYPQCSLSKEETLSQLTNLSLPSNPKFI FT RICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAY FT LEKDGDVLDWGQFQIDRRSARGGKQSINDAYAQALNAGSKSEALRLIKELAPKDYVLQF FT HNLNSNLERIFTPPVEIYRSPFMSSSFDQVPDELEQWVADNVKAAAARPWRPKSIVIEG FT DSRTGKTMWARSLGPHNYLCGHLDISPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNSALKRWTLQNATFITISEP FT LYSGTNQSQAQNREDQENTS" FT CDS complement(2221..2454) FT /codon_start=1 FT /product="C4" FT /note="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7A6R0" FT /protein_id="AFO38437.1" FT /translation="MGNLICMCSSNSRAKSDSRIADCSTWYPQPGQHISIRTFRELSLA FT PMSRHILRRTETSSTGANSRSIDDQREEANNQ" XX SQ Sequence 2781 BP; 694 A; 591 C; 684 G; 812 T; 0 other; accggatggc cgcgcgatac ccgctcaacg tggtccccac gtgacaagac atgtcggcca 60 ctcatgatgc gtctgttgag gttagatatg tgtggtccca ggataaaaac ttcgtcacga 120 agttggtgag tcacacaatg tgggaccctt taagaaatga atttccagaa acccttcatg 180 ggtttcgttg tatgttggct gtgaagtttt tgcaggctct tgtggatagt tacagtccgg 240 atacgaaggg atacgaatac atacgggatc ttatatgtat tctacgctcg cgacattata 300 atgaagcgaa catacgatat ggccttctcg tctcccgtat ccaatgtacg ccggcgtctc 360 aacttcggga gtcctctggc gttacctgct cctgcgagca ctgcccccgg cacttcaaga 420 agacgggcct ggagaaacag gcccatgaac aggaagccca ggttctaccg gacgtttagg 480 agcccagacg tccctcgtgg atgtgaaggc ccatgtaagg tccagtccta tgagcaacgc 540 gatgatgtga aacacaccgg tgttgtgcgg tgtgttagtg atgttacccg tggttctggt 600 attacccatc gggtaggtaa gcgtttttgc atcaagtcca tctatattct cgggaagatt 660 tggatggatg agaatatcaa gaagcagaac cacacgaacc aggttatgtt ttatttggtg 720 cgtgatcgta gaccctatgg gacgagtcca atggactttg gacaagtgtt taacatgttt 780 gacaacgagc cgtcaacggc cactgtgaag aacgatctgc gagatcgctt ccaggtgcta 840 cggaagttct atgctactgt cactggtggt ccttcgggaa tgaaggaaca ggctttagtt 900 aagaggttct ttaggattaa caatcatgtt gtttacaacc atcaggaaca ggcgaagtat 960 gagaatcata ctgagaacgc gttattattg tatttggcat gtacgcatgc ttcgaatcct 1020 gtgtatgcaa cgctgaagat acgcatctat ttttacgatg ccgtcacgaa ttaataaaat 1080 ttaaatttta tttcatgaaa ttcctgaact tcgatacaag tcctaattac attatgtaat 1140 acatgatcga cagatctaat aacattatta atggaaatta cacctaacat gtctaagtac 1200 ttaaggactt ggtatttaaa tactctcaag aaagtcccag accgagtctg tgaagtcgtc 1260 cagattcgga agttcagata acacttgtga agacccagtt ccttccggag gttgtggttg 1320 aaccggatct ggatggtgat gatgtcgtgg ttggtgttga atggccgcac gctctgctcc 1380 gtggtcgtga aatatagggg attgtttatc tcccagataa acacgccatt ccctgcttga 1440 ggagcagtga tgtactcccc ggtgcgtgaa tccatggtta gcacagttga gatgtagata 1500 gtatgagcag ccgcactcga gatcgatgcg tctacgacgt attctcttgg tcttcgcgat 1560 tctgtgcttg actttgattg gtaccggagt agagtggctc actgatggtg atgaatgttg 1620 cattttgaag tgtccaccgc ttcaaagctg agttcttctc ttcctccaag aactctttat 1680 aggacgatgt cgggccagga ttgcagagga agattgtcgg gattccgcct ttaatttgaa 1740 ttggcttgcc gtatttcgtg ttgctttgcc aatcacgctg ggcccccatg aactctttga 1800 aatgttttag atagtgcgga tccacgtcgt cgatgatgtt gtaccaggcg tcatttgaat 1860 agaccttggg actaatgtcc aaatgaccac ataagtaatt atgtggaccc aggcttcgtg 1920 cccacattgt tttgcccgta cgactatcgc cctcgataac aatactttta ggtctccatg 1980 gccgcgcagc ggctgccttc acattgtcgg ctacccactg ctcaagttcg tccggaactt 2040 gatcaaatga agaggacata aaaggagatc tataaatctc tacgggagga gtgaatatcc 2100 tctctaaatt ggaattaaga ttatgaaatt gtaatacata atcctttggg gctaattctt 2160 taattagtcg tagggcttca gacttactgc ctgcgttcag cgcctgtgcg taagcatcgt 2220 ttattgattg tttgcctcct ctcgctgatc gtctatcgat ctggaattgg ccccagtcga 2280 ggacgtctcc gtccttctca agatatgcct tgacatcgga gctagactta gctccctgaa 2340 tgttcggatg gaaatgtgct gacctggttg gggataccaa gtcgaacaat ctgcaattcg 2400 tgagtcggac tttgccctcg aattggacga gcacatgcag atgaggttcc ccattttgat 2460 gcagttctct gcagattctt atgaatttgg ggtttgaagg gagtgacaga ttggttaatt 2520 gcgaaagagt ttcttctttc gataacgagc actgcggata tgtaagaaat aagttcttac 2580 aattaatttg gaattttttt ggagcgttag gcatgttgac tttgtatggg tacccttgac 2640 cgctctcgtc taatcctcgg gtgcaattat attggtaccc atatataggg ggggtaccaa 2700 atggcacgct ggtaattttt acaacttcat gtttgaaatt caaagtttga aagttccact 2760 agcggccatc cgtataatat t 2781 //