ID JX014246; SV 1; linear; genomic RNA; STD; VRL; 3360 BP. XX AC JX014246; XX DT 25-JUL-2012 (Rel. 113, Created) DT 25-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Va segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3360 RA Kim M.K., Kwak H.R., Lee S.H., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT "First report of Cucumber mosaic virus isolated from Vigna angularis var. RT nipponensis in Korea"; RL Unpublished. XX RN [2] RP 1-3360 RA Kim M.K., Kwak H.R., Lee S.H., Kim J.S., Kim K.H., Cha B.J., Choi H.S.; RT ; RL Submitted (03-MAY-2012) to the INSDC. RL Department of Agricultural Biology, Crop Protection Division, National RL Academy of Agricultural Science, 126 Suin-Ro, Suwon, Gyeonggido 441-707, RL Republic of Korea XX DR MD5; 06914f9f7d07901325690ed1b4e76dc5. DR EuropePMC; PMC4174850; 25289004. XX FH Key Location/Qualifiers FH FT source 1..3360 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Vigna angularis var. nipponensis" FT /isolate="Va" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2004" FT /note="subgroup: I" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /product="1a protein" FT /note="replicase" FT /db_xref="GOA:I7A565" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I7A565" FT /protein_id="AFN88455.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKAAHEQLEEQLQHQRRGR FT KVYVRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GIIPELNCQWRKIRNAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYKGTTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVVWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSAVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKALAAQKAEKLAEKLAQPVDEVSGSPEVPSSTLDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELFIVNSECVVCNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVNRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRSIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3360 BP; 848 A; 742 C; 811 G; 959 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttaatcttt tctttgtaaa ttcctatggc gacgtcctcg ttcaacatta 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataagg 180 cagctcatga gcagctcgag gagcaattac agcatcaacg taggggccgt aaggtctacg 240 ttcggaacgt tctgagcgta aaggattccg aagtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggaccttg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacacaac gtacactgct 480 gttccccttg tttgggtatc cgcgataaga tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttttgcactc 600 atccagctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaggcaa tgaatgccca cggaaccacc attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggtataatt cccgaactta 780 attgccagtg gaggaagatt aggaacgctt tctccgaaac tgaagacgtc actccgttag 840 ttggtaagct taattccact gtgttttccc gcgtgcgtaa attcaagact ttggtagctt 900 tcgatttcat taacgaatct accatgtctt atgttcatga ttgggagaac ataaaatctt 960 ttctaacgga ccagacctat tcttacaaag gaacgaccta cggtattgaa cgttgtgtca 1020 ttaatgctgg tatcatgacg tataagatca tcggagtacc tgggatgtgt ccacccgaac 1080 ttattcgaca ttgtatttgg ttcccctcta ttaaagacta tgttggtcta aagattcccg 1140 cgtcgcagga cttggttgtg tggaaaacag tgcgtatttt aacgtcaaca ttgcgtgaaa 1200 ctgaagagat tgctatgagg tgttataatg ataagaaggc gtggatggaa caatttaagg 1260 ttatcttagg tgttctatct gcgaaatcat ctaccattgt tatcaatggt atgtccatgc 1320 aatctggcga acggatagat atcaatgatt atcattacat tggttttgcc attcttcttc 1380 acacaaaaat gaagtacgaa caactaggga aaatgtacga tatgtggaat gcttcgagta 1440 tctcgaagtg gttcgcagcg ttgactcgtc cgctgcgtgt gtttttctct agtgctgttc 1500 acgcgctgtt cccgactttg agaccccgtg aggaaaaaga attcctgatt aagctctcca 1560 ccttcgtaac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acacaggctg ttactgatgg gaaagctttg gctgcgcaga 1680 aagccgagaa gctcgctgag aagcttgcac aacccgtaga tgaggtatca ggcagccctg 1740 aggtgccatc ttcaacactc gatgatactg ccgatgtttg tggaaaggag caagaagttt 1800 cggaacttga ctcattatcg gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgccat gctggagtat gccgcttatg agaaacagtt acatgatacc acagtgtcta 1920 atttgaaacg tatttggaat atggcaggcg gtgatgacaa gagaaattcc ctcgaaggta 1980 atttgaagtt tgttttcgac acgtatttta ctgttgaccc catggtgaac attcactttt 2040 caacggggcg gtggatgcgt cctgtgcctg agggaattgt ctactctgtt ggttataatg 2100 aacgcggttt aggtccgaag tctgatggag agcttttcat tgtcaatagc gagtgtgtgg 2160 tatgtaatag tgagtcttta tctactgtta cacgctctct ccaagctcca actggaacca 2220 ttagtcaggt cgacggggtc gccggttgtg ggaagaccac ggcaattaaa tccatttttg 2280 agccgtccac tgacatgatc gttaccgcga acaagaagtc cgcccaagat gtgcgcatgg 2340 cacttttcaa atcgtcagat tccaaagaag catgcacctt tgttcgaaca gctgattctg 2400 tcctacttaa cgaatgtccg actgtgaata gggttttggt tgacgaagtt gtattgctac 2460 attttggtca attgtgtgct gttatgtcta aactgaaggc tgtgcgagct atatgttttg 2520 gggattcgga gcagattgct ttttcttctc gagatgcctc gtttgacatg cgtttctcta 2580 agataattcc tgatgaaact agtgatgcag acactacatt ccgtagccca caagacgtcg 2640 tgccgcttgt gcgtttaatg gctacgaagg cccttccgaa aggaactcat tcaaaataca 2700 cgaaatgggt ttctcaatct aaagtgaaga gatctgtcac gtcccgttct atcgctagcg 2760 tgacattggt tgacctggat tcctctaggt tctacatcac gatgactcaa gctgataaag 2820 cttcactgat ttcaagggcg aaagagatga acttaccgaa gactttctgg aacgaaagga 2880 ttaagaccgt gcatgagtct caaggcattt ctgaagatca tgttactttg gtaagattaa 2940 agagcacaaa gtgtgacctg tttaaacagt tttcttattg tcttgttgcc ttgactagac 3000 acaaggtcac cttccgctac gagtattgtg gtgtattgaa cggcgattta atcgccgaat 3060 gtgttgctcg tgcttagcgg cttccctcct tcgggcggga tctgagttgg cggtaatcta 3120 caaaccgtct gaagtcacta aacacattgc ggtgaacggg ttgtccatcc agcttacggc 3180 taaaatggtc agtcgtggag aaatccacgc cagcagactt acaagtctct gaggcgcctt 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacttct agcacaacgt 3300 gctagtgtca gggtacgggt gcccccccca cttctgtggg gggcctccta aaggagacca 3360 //