ID JX000025; SV 1; linear; genomic RNA; STD; VRL; 4989 BP. XX AC JX000025; XX DT 10-MAR-2013 (Rel. 116, Created) DT 08-MAR-2018 (Rel. 136, Last updated, Version 5) XX DE Citrus leprosis virus C2 isolate L147V1 segment RNA2, complete sequence. XX KW . XX OS Citrus leprosis virus C2 OC Viruses; Riboviria; Kitaviridae; Cilevirus. XX RN [1] RP 1-4989 RX DOI; 10.1094/PHYTO-07-12-0177-R. RX PUBMED; 23268581. RA Roy A., Choudhary N., Guillermo L.M., Shao J., Govindarajulu A., Achor D., RA Wei G., Picton D.D., Levy L., Nakhla M.K., Hartung J.S., Brlansky R.H.; RT "A novel virus of the genus Cilevirus causing symptoms similar to citrus RT leprosis"; RL Phytopathology 103(5):488-500(2013). XX RN [2] RP 1-4989 RA Roy A., Choudhary N., Leon G., Shao J., Govindarajulu A., Achor D., Wei G., RA Picton D.D., Levy L., Nakhla M., Hartung J.S., Brlansky R.H.; RT ; RL Submitted (01-MAY-2012) to the INSDC. RL Plant Pathology, Citrus Research and Education Center, University of RL Florida, 700 Experiment Station Road, Lake Alfred, FL 33850, USA XX DR MD5; 181d9070815979cade2ad723fed43b77. DR EuropePMC; PMC4926173; 27275832. DR EuropePMC; PMC5786682; 29371356. XX CC ##Assembly-Data-START## CC Assembly Method :: velvet v. 1.2.03 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4989 FT /organism="Citrus leprosis virus C2" FT /segment="RNA2" FT /host="Citrus sinensis cv. Valencia" FT /isolate="L147V1" FT /mol_type="genomic RNA" FT /country="Colombia" FT /isolation_source="leaf" FT /collected_by="Guillermo Leon" FT /collection_date="01-Jul-2011" FT /db_xref="taxon:2052685" FT 5'UTR 1..92 FT CDS 93..485 FT /codon_start=1 FT /product="p15" FT /db_xref="UniProtKB/TrEMBL:M1JB32" FT /protein_id="AGE82889.1" FT /translation="MHEDSSNRWLDRDDLGYPPVFAPQILTCGCEITSYEHDSLSFLVE FT NFCRVFLCDEIDCLNHVRRVCFDVTGDRLKIFRLYLCSILHEVSCRCWDCEGECRPRGF FT FLGRLRGRVRRHTLSDPSGSPTSVLD" FT CDS 645..848 FT /codon_start=1 FT /product="p7" FT /db_xref="GOA:M1JAW7" FT /db_xref="UniProtKB/TrEMBL:M1JAW7" FT /protein_id="AGE82892.1" FT /translation="MINMNEMALIFIGSYSYASARTVFGGTWNAHTFEARSFEFIIIVV FT FIHVTILFYLSFTILGMDKTIL" FT misc_feature 762..830 FT /note="Region: putative transmembrane domain" FT CDS 1493..3127 FT /codon_start=1 FT /product="p61" FT /db_xref="GOA:M1J7K9" FT /db_xref="UniProtKB/TrEMBL:M1J7K9" FT /protein_id="AGE82890.1" FT /translation="MDFYTVYTFLNLTLGLLTYNYDSLGTFGPTPRCTSKRCSLLPAEC FT STEHTVNKVVERHVFTANDHYCISLGYRKNISFSVSTLFIGDYDVYGGFECDRTALSMG FT IVSNRLGFYEDALFDCKNYNLSYGNYRFEFCLNSSVYDSVLTDKFYTPQIEAAAPINTR FT GVEVFDDFLGFTYYRTSCDSFCSESKFSPDFDFGNYVFYFPLCDNHIPLCYDGAEDSCP FT RGYSLQTIFVSSLVEEETEKLARVICVSDNEPGLTFPAWFRDNPSTYDDLVGNYTINVE FT SKCGVAMSKKMRFSRYGVTGTYIDDIIVVTIDEVHFLTSKFCRDYILFLGYRDGYDNDF FT SMKTYFQKRLNCNSDGCWYSGVDLSRILSHCELSLVVEKKEALVSTFTLFNKTFGGKVG FT FIPVGLSDSVLFGYNVFLFRGFYSYSSSSVTLKSTKYFLVKAEAEWYMKLMMFFADDVL FT KVCFETIFSVLLGALSSCLSFIFNIGGCCFRLVFLCVMDSIIILLCLLPCYCHLGFILC FT SVSNLIIKLFMKNNCCFGISDAVASSF" FT sig_peptide 1493..1546 FT /note="predicted by signalP" FT misc_feature 2903..2971 FT /note="Region: putative transmembrane domain" FT CDS 3160..4038 FT /codon_start=1 FT /product="p32 movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:M1JMH0" FT /protein_id="AGE82893.1" FT /translation="MVSVGADDFAELESILTADYNEEGVFKSSKSVCLRTSKRVGIGFL FT TPNDFISRLNGFIRRKAEDSGLRDMESFRQMSDIVIIIVPQVAFSATLTLKLVDSCNAL FT EAVYDQTAVLCSTSGPHIAVFNTGYSIPNEDRISIGGNETHRRLGISYEIEHSENLGGG FT HITFFTLTLLWREAFSLRPSFYKVHEPRLIPITVGYKKALMSKSHADLKRSISRGMVTT FT GHSAVPSIKNESAISVIEDKKKTVAERGVVIEELDSSIESKNPSSSQNLKPKKLKFFEV FT EKRDNDGPTLS" FT misc_feature 3160..3873 FT /note="Region: 3A domain" FT CDS 4019..4639 FT /codon_start=1 FT /product="p24" FT /db_xref="GOA:M1INA5" FT /db_xref="InterPro:IPR032441" FT /db_xref="UniProtKB/TrEMBL:M1INA5" FT /protein_id="AGE82891.1" FT /translation="MDQRFLRGASVLNLSNKREKLKTNASVSLLSDIQQILLRYIQKPY FT VLLMYACVLVLFAMHIDAGTHDILDDLAQQFPNNPVIEWARNNFFRLCGALVFIPVITD FT ARKEHQLYFGMVIALFLLGFPQRSIFEYFVYSLSLHVYAKSKHPFTRIFILVITVVSCV FT LFGVFTNDQLRKLYQELPKVPTHPVNKVERVVNRVGGQQSFSG" FT misc_feature 4148..4201 FT /note="Region: putative transmembrane domain" FT misc_feature 4259..4327 FT /note="Region: putative transmembrane domain" FT misc_feature 4346..4405 FT /note="Region: putative transmembrane domain" FT misc_feature 4463..4522 FT /note="Region: putative transmembrane domain" FT 3'UTR 4640..4989 XX SQ Sequence 4989 BP; 1257 A; 907 C; 1023 G; 1802 T; 0 other; ataaaaagaa ttttgtgtca gtgcaattgt tgaattgtaa tttcacaata cttgctatcc 60 cttatatatt acgaaagttt tatatattga atatgcatga ggattcttca aatcgctggc 120 tggaccgtga cgatttaggg tatcctcctg tttttgcacc gcagatttta acatgtggtt 180 gtgagatcac ctcatacgaa catgattcac tatcattttt agtggagaat ttttgtaggg 240 tgttcttatg tgacgagatt gattgtctta atcatgttcg tcgagtttgt tttgatgtta 300 caggagatag actaaaaatt tttagactct acctatgtag cattttgcat gaagtttcgt 360 gcagatgttg ggattgtgaa ggtgaatgta gaccaagggg cttcttctta ggaagactcc 420 gtgggcgagt tcgtcggcac acccttagtg atccttctgg atcaccaact tctgtacttg 480 attagttttg tgtaaacact aaacgaactg tacaggtgtt gcatgatctc cggacgtaga 540 acttcggacg taaatgcatt tagtggatac tgggatgtac cgcgcttgta ctagttcgtt 600 tatgtagttt atatttatta gagtttagtt acttgagttt taccatgatt aacatgaatg 660 agatggctct tatcttcatc ggcagttaca gctacgcttc ggcccggact gtatttggtg 720 gtacctggaa tgcccacacc tttgaggcca gatcctttga attcattatt atagtggtat 780 ttattcatgt cacgattctc ttttatttga gctttaccat tcttggtatg gataagacga 840 ttctctgatt tcatacatga gattggtatt tgctcatatg gattttgaat tttatctttg 900 gttttatgga tatgacgact cttaatcttc atcggcagtt acagctgcgc ctcggcccgg 960 actgtatttg gtggtacctg gaatgcccac acctttgaag acagaatact ctatttcata 1020 tgtcgcaatg atatttattc atattttgtg tatcgctcag ccgattttgg tttgagcatt 1080 tacacacact tagtttgaga ttatctgtac gtttatcaca atgttgattg acgttttaga 1140 ttctctcacg tatagtacgt gggctataat cggttaaaat tttaaccgta ttatttccta 1200 acatattcga gatgacttga tctcccgtcc ttctcagtat tgctataccg tttaacggtg 1260 ttgagataaa ctggcgtcgg tcgattctca gttttaccat cttgtttggt aactcttgta 1320 tatatgtaaa taggtaaggg ttcttgcgtg ccaagagtct tctgtattaa tgtagtggac 1380 tgctgcttcg atagagttgc agcagtactt gcattgatat gtaaatacac agagatacat 1440 atcaatgatc cactccttat tatggagaca aatcaaggta tgagttcaca caatggattt 1500 ttataccgtg tacacgtttc tgaacctaac cttagggttg ctcacgtaca attatgatag 1560 cttaggtacc tttggtccta caccgagatg tacatctaag cgctgttctt tgttaccagc 1620 tgaatgcagt accgaacata ctgtaaacaa ggttgttgaa cgtcatgtat ttacggccaa 1680 tgatcattac tgcataagct tagggtatcg taagaacatt tcatttagtg tttctacttt 1740 gtttattgga gactatgacg tttacggcgg tttcgaatgc gatcgtactg ccttatccat 1800 gggtatagtt tccaacagac tgggctttta tgaagatgca ctatttgact gtaagaatta 1860 caacctttca tacggtaatt accgttttga attttgtttg aattcatcag tttacgatag 1920 cgtgttgacc gataagtttt ataccccaca aatagaagct gctgcaccca taaataccag 1980 aggtgtcgaa gtgttcgacg actttctggg gtttacatat tatcggactt catgtgatag 2040 tttttgtagt gagtcaaagt tttcaccaga ttttgacttt ggtaactacg ttttttattt 2100 cccgctctgt gacaatcata ttcctctgtg ttatgacggt gcggaagatt catgtccacg 2160 tgggtactcc ttgcaaacga tttttgtttc atctcttgtt gaagaagaga cagaaaaact 2220 tgctcgcgtt atatgtgttt cggacaacga acccggtttg actttcccag cctggtttag 2280 agataatcca tctacatatg acgatttagt cggtaactat actataaatg tcgaatctaa 2340 gtgcggtgta gctatgtcca agaaaatgcg gttttctcga tatggtgtca ccggaactta 2400 cattgatgac attattgttg ttacaatcga cgaagtacat tttctcacta gtaaattttg 2460 tagagattac atcttatttt tgggataccg cgatggatat gataatgatt tcagcatgaa 2520 aacttatttt caaaagcgac tgaattgtaa ttcggatggg tgttggtaca gtggagttga 2580 cctttcacgt atattatctc attgcgaatt atctttagtt gtcgagaaga aggaagctct 2640 tgtttcgact ttcactttat tcaataaaac attcggagga aaagtcgggt ttatacctgt 2700 cggtctttcc gattctgttc tattcggata taatgtattt ttatttcgtg ggttttattc 2760 gtattcgtct tctagcgtta ctttgaaatc cacaaaatat ttcttagtca aagctgaagc 2820 tgagtggtac atgaagctta tgatgttttt cgccgatgat gtactaaagg tttgttttga 2880 aacaattttt agtgtccttc tcggggcatt atcttcttgt ttatcgttca tctttaatat 2940 tggtggctgc tgtttccgac tagtttttct gtgtgtcatg gattctatta taattttatt 3000 gtgtctttta ccttgttact gtcacttggg atttatcctt tgttcagttt caaatctcat 3060 aataaaatta tttatgaaga ataattgttg tttcggcatt tcagatgctg tcgcgtcttc 3120 cttctaaatc aaggcattac gtcatgattt tgattgaaga tggtgtctgt tggtgctgac 3180 gactttgctg aattagaatc cattttgaca gccgactata atgaggaagg tgtttttaaa 3240 tcttcgaaat ctgtctgtct tagaacttct aaaagagttg gtatcgggtt tttaacacct 3300 aatgatttca tttctcgtct taatggtttc attagacgga aagctgaaga ctccggtttg 3360 agagatatgg aatcctttag gcagatgtcc gatatcgtaa tcataatagt tccacaagtt 3420 gcgttttcag ccacacttac attaaagttg gttgattcgt gcaacgcttt ggaagctgtt 3480 tatgatcaga cagctgtcct ttgctctacc tctggtcccc atattgcggt ctttaatact 3540 gggtattcca ttccgaatga ggatcgtatc tctattgggg gaaacgagac tcatagaaga 3600 ttaggtatat cctatgagat tgagcactct gagaaccttg gtggtgggca tatcacattt 3660 tttacactta ctttgttgtg gcgtgaagcg ttttcattgc gaccatcctt ttataaggtg 3720 catgaaccta gactcatacc tataacagtt ggttataaaa aggcattgat gtctaagtcg 3780 cacgctgacc ttaagagatc catttcacgc ggtatggtta ccactggtca ttctgctgtt 3840 cccagtatta agaatgagag tgctatcagt gtgatagagg acaagaaaaa gacggtcgcc 3900 gagcgtggtg ttgttattga ggaacttgat tcttctatcg aaagcaagaa tcctagttca 3960 tcgcaaaatt tgaaaccgaa aaagttgaag ttctttgaag tggaaaaacg cgataacgat 4020 ggaccaacgc tttcttagag gcgcatcagt tttgaatttg tcgaacaaac gtgagaagct 4080 gaagactaac gcttctgttt ctcttttgtc cgacatccag caaattttat taaggtatat 4140 tcagaaacct tatgtacttc tcatgtatgc ctgtgtacta gttctatttg ctatgcatat 4200 tgatgctggt acacatgaca tacttgatga tttagctcaa caattcccga acaacccagt 4260 tattgagtgg gctcgtaaca acttctttag gttgtgtggc gcactggttt tcatacctgt 4320 tataaccgat gctcgcaaag aacatcagtt atatttcggt atggtcatcg ccctcttctt 4380 gctagggttt ccgcaacggt caatattcga gtactttgtg tactcgttat cattgcacgt 4440 ttacgctaaa tccaagcacc cttttactcg gatcttcatc ctggtgatca ccgtagtttc 4500 atgcgtcttg tttggcgtat ttacgaacga ccagctcagg aagttgtatc aagaattacc 4560 aaaagttccc actcatccag tcaacaaagt tgaaagagtt gttaaccgcg ttggtggtca 4620 acaatccttt tcgggttgac ttcttttgat tcttccgggg tttttgttac ggcttctttt 4680 ccccgtgagt gtagaaaccg ttttgagcgt ttatttaagc gtatgcttgt atattcgttc 4740 attattatat cttgaagata ctctttgttt cttcaatatc tctgaggttt tctatggatt 4800 ctttcctcag acatttcaac tttgaatcct acatattctt catgaataca tacatggata 4860 atatgtattc cggtcgttgt cagctgggag gggtttaaat tccctaatga ttagttaatt 4920 tatctctctt ctagctggga tcagacgtcc cttttctttt ttccttttct tttttcttgt 4980 cattatgac 4989 //