ID JQ982470; SV 1; linear; genomic RNA; STD; VRL; 4436 BP. XX AC JQ982470; XX DT 22-JUL-2012 (Rel. 113, Created) DT 22-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Maize chlorotic mottle virus isolate Sichuan, complete genome. XX KW . XX OS Maize chlorotic mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Machlomovirus. XX RN [1] RP 1-4436 RA Wang Q., Wu J., Hong J., Zhou X.; RT "Infectivity of Maize Chlorotic Mottle Virus on Zea mays"; RL Unpublished. XX RN [2] RP 1-4436 RA Wang Q., Wu J., Hong J., Zhou X.; RT ; RL Submitted (26-APR-2012) to the INSDC. RL College of Agriculture and Biotechnolog, Zhejiang University, Institute of RL Biotechnology, 388#, Yu Hang Tang Road, HangZhou, ZheJiang 3100558, China XX DR MD5; 4792c3e8e07725a69f4eb07eaa37a269. DR EuropePMC; PMC3709059; 23825140. DR EuropePMC; PMC5216416; 28059116. DR EuropePMC; PMC5368279; 28400775. XX FH Key Location/Qualifiers FH FT source 1..4436 FT /organism="Maize chlorotic mottle virus" FT /host="Zea mays" FT /isolate="Sichuan" FT /mol_type="genomic RNA" FT /country="China:Panzhihua, Sichuan" FT /collection_date="May-2011" FT /PCR_primers="fwd_name: 5-f, fwd_seq: FT aggtaatctgcggcaacagaccccaacg, rev_name: 3-r, rev_seq: FT gggccggaagagaggggcattac" FT /db_xref="taxon:12138" FT misc_feature 118..987 FT /note="similar to P32" FT CDS 137..3034 FT /codon_start=1 FT /transl_except=(pos:1451..1453,aa:OTHER) FT /product="P111" FT /note="111kDa protein; read-through protein" FT /db_xref="GOA:I6ZQR3" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I6ZQR3" FT /protein_id="AFN69365.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITRIA FT QQILRWPPYIRERVTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMLLIPFRF FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPLQPQTARDLSNPHGLWMSTRNKLTQTGGSVNQQTSRYVRLAVRFSLLAAGAYFSCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKNDKGELVSC FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYTRIYGY FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYA FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE FT EYFRSWTPTFEWSTTGILAEIPECLLLKHNPLPPT" FT CDS 137..1453 FT /codon_start=1 FT /product="P50" FT /note="50 kDa protein; putative replicase" FT /db_xref="UniProtKB/TrEMBL:I6ZHG2" FT /protein_id="AFN69366.1" FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITRIA FT QQILRWPPYIRERVTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMLLIPFRF FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM FT TPLQPQTARDLSNPHGLWMSTRNKLTQTGGSVNQQTSRYVRLAVRFSLLAAGAYFSCVL FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK" FT CDS 2995..3834 FT /codon_start=1 FT /transl_except=(pos:3199..3201,aa:OTHER) FT /product="P31" FT /note="31kDa protein; read-through protein" FT /db_xref="UniProtKB/TrEMBL:I6YX64" FT /protein_id="AFN69367.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRIVLASVVKEFNLGDFDLLDSVHLDENTG FT HRCRLSRAIGVLDRSNAKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD FT PTRSETVPHLREQPAPCPKFCLQCQQQLLTKFSRFQCAQGLTSQLERHPDTLGRPNGWQ FT HNHRCGTQLCSTLCASLGKHSQQTPLADTFPWHSSLITCYQYPLGWRMLPGSCPQLQ" FT CDS 2995..3201 FT /codon_start=1 FT /product="P7" FT /note="7kDa protein" FT /db_xref="UniProtKB/TrEMBL:D1MF40" FT /protein_id="AFN69368.1" FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE FT GAPAQQNVIIAKEVVINNHFNFN" FT CDS 3384..4094 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:D4P968" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4P968" FT /protein_id="AFN69369.1" FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTPPRYIGAAKWLAAQSQMWNTIVFN FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI FT LQPALVPGPGLANH" XX SQ Sequence 4436 BP; 1199 A; 1121 C; 1119 G; 997 T; 0 other; aggtaatctg cggcaacaga ccccaacgcg ctaaacacga ccttacagtt gactcacgtc 60 ttgcatcctg tgagagcttt agcgtgggaa tttgcccctg actggcaatc aggtttcatg 120 ccctctccgt gcacatatgg cgaccctacc ttcaattcac gcattttgga agctgtggtg 180 gccgacgttc tcggaggaac ggaagatgac ggtggtccaa gccttgagga atggtttgac 240 gcgcaaactc tttcagatta cacgaattgc gcaacagatc ctccgatggc caccgtacat 300 acgcgagaga gtgacatcaa gtcttggacg gagcttagtg aaaactttcc agaccttgtt 360 aggtatccgg aaagtcttgt cgaaactctg cttgacacgg aacatgaatg tggacatttt 420 tacgatgctc ctgattcctt tcagatttct gtcacagcta tgttcacaga tcgttgcaag 480 tgccaggcat gtgatccaga ctttcaaaca cggtctctct cgcgggctct gcttggcccg 540 ttgccggaat ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa 600 ttgttcgtca acgagcccac tgatgacccc attgcaacca cagactgcaa gagacctatc 660 caacccacat ggtctgtgga tgtctactcg aaacaagttg actcagactg ggggctcagt 720 gaatcaacaa acgtcacggt acgttcggct agcagttcgc ttctccctgc tggccgcggg 780 ggcatatttt tcatgtgtcc tcgcccggaa ggcattgaaa gagtatgtct acaggtggga 840 gctaaaatcc gatcaggaac tcccaactcg ggaacagtca caaatctccc aggtggaaca 900 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga cggcccctat 960 tctatccctc caggactgtc tgactaaaca cgttctggtt ccagagattg tggacgaaga 1020 aggcacagtg acacaaaaag agcagtccac atttctcatc cgtgagtttg gccctgccgt 1080 cagaaaccta gtgaccctcg caaaactaga attcggcggg attccaaaga aaaccactgc 1140 caacgagctc acggtttggc ggttcctggt acggaagtgt gagcaagcaa atatgaatcc 1200 aactgactcc cgtactgcca tttcaatggc cctgccatat gtgtttatgc cgtgccgtac 1260 tgatgttgga agagcttcaa ttccactgcg tgatgaatcc attgagatct gtcgccaata 1320 tcgcgcacaa tttgtggagg agacacccct acggcgagta ttcaacaacc cactgagcgg 1380 aaaagcatgg cgtaattggg ttaggcacct gggtgggctg gatgatccag ccctattcca 1440 ggagctgaaa taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc 1500 gcggcatccc aaactccgta gccactttaa agacacgaga cacaaaaccc gcagagtgtt 1560 ccggattgca ggtttgggca acctgtatga atttggggtc cacaacaact ctgcggttaa 1620 cctggaacgt ggactgatgg aacgagtatt ttatgtgaaa aatgataagg gggaactcgt 1680 ttcatgccct gagccaatta gtgggatatt ttggaaaaat ttgaagggat tcagaaatag 1740 cattgttcac catgtgggac acagacatcc ggtgtcacga gagacgtttc tcgcttacta 1800 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg aaatgcctgt 1860 ctcatacgac gatgctaaac tgaaaacatt tgtcaaagca gaaaagatca atctcactaa 1920 gaaagctgat cctgtaccac gtgtgatcca accccgtgct ccccggtaca atgtggaact 1980 gggtaggtat ttgagaccgg ttgagcaccc aatctaccat gccatagaca agatttgggg 2040 tggtccgact atcatgaaag gttactcggt tgaacagatt ggaagacaca tcgaaaacgc 2100 gtttcgatcg ttcaccgatc cagtagccat tggatttgat gcaagtcggt ttgatcaaca 2160 cgtgagtgtt gaagctctac gctgggaaca tagcgtatac acaaggattt atggctatcc 2220 agagcttctc acacaattgc tgcggtggca gattcacaat cgtggaacag catacgcttc 2280 agacggcgcg ttcaactacc aggtggatgg taaacgcatg agtggagaca tgaacacatc 2340 attgggcaat tgcatcctgg ccacagcaat cacacatgac ttcgtgacca agctgggaat 2400 tccagccaga ttaatcaaca atggagatga caacgtcctg atctgtccgg cagtggaggt 2460 aggcagagtc agacaggaac tgtacagaca ttggttgaac tacggatttg aggtcatatc 2520 agaagaacct gtatacatcc ttgaacaggt tgagttttgc cagatgcgac cagtctttga 2580 cggtacacaa tacaccatga tgagagaccc acgcaccacc atgtccaagg atgcatatgc 2640 tgttacccct tttaacacgc caaccgcagc aaggaggtgg atgagagcag ttggggaatg 2700 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatgctg ctctcgtgaa 2760 acacggacta gatccgaaaa acattaaaca gggaaaagac tttgacagtg ggctatatta 2820 tcttagcaag ctatccaatc gcaaatggca ggaggtccaa gagagcgctc gttactcatt 2880 ctggcttgct ttcgggtaca caccagatga acaacgagcg ttagaggagt attttagatc 2940 ttggactcct acgtttgaat ggtccacaac gggtattttg gcagaaatcc ccgaatgtct 3000 tcttctcaaa cacaatcccc tcccaccgac gtagcccgca gacaacagac cggcactgcc 3060 gtgcgatccg aagataacca tcgcaatcag ttggaaaaca ttgctgttgg aaaactcacc 3120 aaatctgaag gagcacccgc ccaacagaac gtgatcattg caaaagaggt ggttatcaat 3180 aaccacttca atttcaactg agctggagtg tgtgtgtgta gaatcgtcct ggcctcagtg 3240 gttaaggaat ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaaaac 3300 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc aaacgcaaaa 3360 attccaaaag atcgacatac acaatggcgg caagtagccg gtctacccga ggtagaaagc 3420 agcgcggacg tagcgtggaa gcaaaatcca gagctattcg agccaacccg cctgtccctc 3480 gacccaaccc gcagcgaaac cgtcccccac ctgcgggaac aacctgctcc atgtccgaaa 3540 ttctgcttgc agtgtcagca acaactgctg accaaattct cgagattcca gtgtgcgcag 3600 ggattgactt cccagctgga acgccacccc gatacattgg ggcggccaaa tggctggcag 3660 cacaatcaca gatgtggaac acaattgtgt tcaactctgt gcgcatcact tgggaaacat 3720 tcacagcaga caccactagc ggatacattt ccatggcatt cctctctgat tacatgctat 3780 caatacccac tggggtggag gatgttgcca ggatcgtgcc ctcagctaca atagctctga 3840 agaacagagg gccgtccatt gttatgccac aaaaccgcac tgtgttcagg tgcatacagg 3900 ctggtcagtt tgctgcgttg ggcagcgcgg ctgacaagca aatgtattcc cccggacgat 3960 tcattgtggc tatccccaaa gctagtgcaa cacaagcggt aggccaaatc aaaatctcgt 4020 actccgtgtc ctaccgtgga gcagcaatcc tacaacctgc cctggttcca ggcccagggc 4080 tggcaaatca ttgagcataa ggtgagccgg catgaggttg caagaccgga acaaccagtc 4140 cttctggcag agccctgcca atccaaagtg tctgggagcc taaatcgtat actagtagtt 4200 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact gggcgtatat 4260 agtaagcctt gacccaccca tggaaaacac gtatttacga acggtacgac atggtaactg 4320 gatacactta accctggggc aagtagatgc taggaaacta gcaccgggcc gcccacgagg 4380 gtttctgaac tcaacggagt agaacggggg ggggtaatgc ccctctcttc cggccc 4436 //