ID JQ975095; SV 1; linear; genomic RNA; STD; VRL; 2765 BP. XX AC JQ975095; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M118 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; 32d1c6e68ed8c8a4ca40a1f0103bbad2. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M118" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="03-Jun-2011" FT /db_xref="taxon:53954" FT CDS <1..>2765 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K0I9L0" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0I9L0" FT /protein_id="AFU50466.1" FT /translation="SARSLFIDAGLYAVALSLVYCALQIIRKIFKRLSKMLHDDDTTRL FT AQYDEMRIMAKGNKQLIAMIDKMEDEQSESLVHHAQGKADNMYVKILAWISLFVGCFNV FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQDEQEDMKRLLDTRDNFIDFVYQHDEH FT DGSVDRESLDAWYTRICYQERVTEHPLKCGQELTLTRLNSTDIAESITRTSHNEFTVIG FT GVGTGKSTKLPGALSIYGPVLILVPSRELSINLAASIEGVTQKVPSVYMHNCSIRGTSN FT ITIMTYGYALIFFYHNRIEMQKYKFIQMDECHEFSEHMICFYAWWKENSQYTKLVKTTA FT TPPGARIHNGFVDTNHEVIVQEIPSITVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHTFYQIIVTTTVLQNGVNL FT SPDGAIDFGITYEAAYDTDHRILTVRRRNINPGELIQRVGRIGRDKPGTFIQVGKRLDR FT EQPPNACTTTNAILISFAMELAPYVGPHLIEDINWVTREQIKTAMLFSAPLLFMIHYIR FT RDGKMLEGFYHQFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLSGEIEHDEPLPAI FT PIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL FT TVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQDESSYHWVGSEKDIID FT DWGAAYAKKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYV" FT mat_peptide <1..243 FT /product="P3 protease" FT mat_peptide 244..390 FT /product="6K1 protein" FT mat_peptide 391..2358 FT /product="CI protein" FT mat_peptide 2359..2502 FT /product="6K2 protein" FT mat_peptide 2503..>2765 FT /product="Vpg protein" XX SQ Sequence 2765 BP; 860 A; 560 C; 618 G; 727 T; 0 other; agcgctcgtt cattattcat agatgctggc ctttacgccg tggctttatc attggtttat 60 tgcgctctcc agatcattag gaagatcttt aaaagattaa gcaaaatgct ccatgatgac 120 gacaccacac gactagcgca gtatgacgaa atgaggatta tggctaaagg taacaaacag 180 ctcatcgcaa tgatcgataa gatggaagat gaacaatcag aaagcttagt gcatcacgcg 240 caaggtaaag cagacaacat gtatgttaag attcttgcat ggatatctct ctttgttggc 300 tgctttaacg tgggattagc gaatgacata tattttgcgg tcaccaaata tcgcacactc 360 ttggacatcg ctacaacaag ttcacccgag tccttggtat ttcacgcaca agatgaacaa 420 gaagacatga aacggttgct ggacactcgt gataatttca ttgactttgt ttaccagcat 480 gatgagcatg atgggagcgt tgatagagag agtcttgacg cctggtatac gagaatttgc 540 tatcaagaga gggttactga acatccgctc aagtgtggtc aagagctcac tctcacaaga 600 ctcaatagca cggacatcgc agaaagcata acacgcacgt ctcataacga gttcactgtt 660 attggtggtg ttggaacagg gaagagtaca aaactccctg gtgcgttatc catttatggt 720 ccagtgttga tattagtgcc ttcgcgagag ctatcgatta acctcgcagc tagcatcgaa 780 ggagttacac agaaagttcc aagtgtttac atgcataatt gctcgatccg aggcacaagc 840 aacattacca tcatgacata tggttatgcg ctgattttct tttatcataa tcgaattgaa 900 atgcaaaagt ataagtttat tcaaatggac gagtgtcatg aattcagtga acatatgatc 960 tgtttttatg cctggtggaa agaaaactcg caatacacta agctagtgaa gacgacagca 1020 acaccaccag gagcacgcat tcataatgga tttgttgata ccaatcatga ggtgatagtg 1080 caagagattc caagtataac agttgatgaa ttctgtcgca aatctatcga tcgacacgtt 1140 gatggcttac aagctcggtt tccaaacgga ggacgtatac tcatctttgc cccatcacga 1200 aaggattgcg aatatattaa ggcctcactc attacgatgg ggaggacaaa aatttgggct 1260 gtctaccgga aaagcacctt ggctggtgaa aagttgattg aagagcttaa taatgaccac 1320 actttttatc agatcatcgt caccacaaca gttttgcaga atggagtgaa cttgtcacca 1380 gatggagcaa ttgattttgg tatcacttat gaggctgcat atgacacaga tcatagaatc 1440 ctcactgttc gacggagaaa tatcaaccca ggtgagttaa tacaaagagt tggtcgtata 1500 gggcgggata aaccaggaac gtttattcaa gttggcaaga ggttagatcg agaacaacca 1560 cccaatgctt gtacaacaac caacgctatt ttaatttcgt tcgctatgga gctagcccca 1620 tatgttggac cacatcttat tgaagatata aactgggtta caagagagca aataaaaaca 1680 gctatgttat ttagcgcacc tttgctattt atgatacact acattcgaag agatggaaag 1740 atgttggaag ggttttacca ccagttcaaa ggacttctac tacgaacaag tgaggtaata 1800 ctttgccatg atttaatctc tgaaccacag cggcacagtt atcgtacttt acgagattac 1860 caactttctg gtgaaataga acacgatgaa cccttgccag ctattcctat tccattctac 1920 tcgaatgact ttgcggtgcc attttatatc gctcttggtc acataacagc agaggcgatt 1980 aaaccacgat ctttcacagt gagactccct gtacccaacg tgaagaaagc agtattaaga 2040 ttgtcaactt cagaggcgca agtggataga actattggaa tcttacaagt tcgattacaa 2100 caaattcgag aacgccttga taaatttaac actttgcgtg ctgaaacggc tgggttacgg 2160 ttgacaaacc tatttaacac atgttatacg agggcaacca gccagagcga aaagtcactt 2220 caagcctcgc tcattttagg tacagaactc ctctcatcct tggagatcgc tcgtgctgag 2280 aaaaatgata aagagctgga aaaattactg gctaacaatc ccatgcttag tgagtgtctc 2340 atttaccacg gaggacagga agctttcttg gagcaatatt tatttccaac tttcaaacac 2400 ccaattaaag cttacttagt ggcgattgct tgcctaacag ttggcgttgg ctgtctcggt 2460 tattactact taaagaggag ggaaacctta atcatgcatg ccgggaagaa gcgtcgaact 2520 catgctcgtg aggaccggta taagcgaact ggcttaatgg ggcaggatga atcgagttat 2580 cactgggttg gaagtgaaaa agacattatc gacgactggg gagctgccta cgccaagaag 2640 aatgccggaa agaaaaagcc ctcagactgg gatgatggaa aacagcagtg ggactcacgt 2700 gaggggacat atacgaatgt tttcaaaaca ctatatgact tggacccgac gaaattcaag 2760 tatgt 2765 //