ID JQ975092; SV 1; linear; genomic RNA; STD; VRL; 2765 BP. XX AC JQ975092; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate W17 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; 781dbf6cd8926d7d9b9f0b3c108cf6ee. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="W17" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="26-Aug-2010" FT /db_xref="taxon:53954" FT CDS <1..>2765 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K0I840" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0I840" FT /protein_id="AFU50463.1" FT /translation="SARSLFIDAGLYAVALSLVYCALQIIRKIFKRLSKMLHDDDTTRL FT AQYDEMRIMAKGNKQLIAMIDKMEDEQSESLVHHAQGKADNMYVKILAWISLFVGCFNV FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQNEQEDMKRLLDTRDNFIDFVYQHDEH FT DGSVDRESLDAWYTRICYQERVTEHPLKCGQELALTRLNSTDIAESITRTSHNEFTVIG FT GVGTGKSTKLPGALSIYGPVLILVPSRELSVNLAASIEGVTQKVPSVYVHNCSIRGTSN FT ITIMTYGYALIFFYHNRIEMQKYKFIQMDECHEFSEHMICFYAWWKENSQYTKLVKTTA FT TPPGARIHNGFIDTNHEVIVQEIPSMTVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHTFYQIIVTTTVLQNGVNL FT SPDGAIDFGITYEAAYDTDHRILTVRRRNINPGELIQRVGRIGRDKPGTFIQVGKRLDR FT EQPPNACTTTNAILISFAMELAPYVGPHLIEDINWVTREQIKTAMLFSAPLLFMIHYIR FT RDGKMLEGFYHQFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLSGEIEHDEPLPAI FT PIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL FT TVGVDCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQDESSYHWVGSEKDIID FT DWGAAYAKKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYV" FT mat_peptide <1..243 FT /product="P3 protease" FT mat_peptide 244..390 FT /product="6K1 protein" FT mat_peptide 391..2358 FT /product="CI protein" FT mat_peptide 2359..2502 FT /product="6K2 protein" FT mat_peptide 2503..>2765 FT /product="Vpg protein" XX SQ Sequence 2765 BP; 855 A; 561 C; 623 G; 726 T; 0 other; agcgctcgtt cgttattcat agatgctggc ctttacgccg tggctttatc gttggtttat 60 tgcgctctcc agatcattag gaagatcttc aaaagattaa gcaaaatgct ccatgatgac 120 gacaccacac gactagcgca gtatgacgaa atgaggatta tggctaaagg taacaaacag 180 cttattgcaa tgatcgataa gatggaagat gaacaatcag aaagcttagt gcatcacgcg 240 caaggtaaag cggacaacat gtatgttaag attcttgcat ggatatctct cttcgttggc 300 tgctttaacg tgggattagc gaacgacata tattttgcag tcaccaaata tcgcacgctc 360 ttggacatcg ctacaacaag ttcacccgag tccttggtat ttcacgcaca aaatgaacaa 420 gaagacatga aacggttgct ggacactcgt gataatttta ttgactttgt ctaccagcat 480 gatgagcatg atgggagcgt tgatagagag agtcttgacg cctggtatac gagaatttgc 540 tatcaagaga gggttactga acacccgctc aagtgtggtc aagagctcgc tctcacaaga 600 ctcaatagca cggacatcgc agaaagcata acacgcacgt ctcataacga gttcactgtt 660 attggtggtg ttggaacagg gaagagtacg aaactccctg gtgcgttatc catttatggt 720 ccagtgttga tattagtgcc ctcgcgagag ctatcggtta acctcgcagc tagcatcgaa 780 ggagttacac agaaagttcc aagtgtttac gtgcataact gctcgatccg aggcacaagc 840 aatattacta tcatgacata tggttatgcg ctgattttct tttaccataa tcgaattgaa 900 atgcaaaagt ataagtttat tcaaatggac gagtgtcatg aattcagtga acatatgatc 960 tgtttttatg cctggtggaa agaaaactcg caatacacta aactagtgaa gacgacagca 1020 acgccaccag gagcacgcat tcataatgga tttattgata ccaatcatga ggtgatagtg 1080 caagagattc caagtatgac agttgatgaa ttctgtcgca aatctatcga tcgacacgtt 1140 gatggcttac aagctcggtt tccaaacgga ggacgtatac tcatctttgc cccatcacga 1200 aaggattgcg aatatattaa ggcctcactc attacgatgg ggaggacaaa aatttgggct 1260 gtttaccgga aaagcacctt ggctggtgaa aagttgattg aagagcttaa taatgaccac 1320 actttttatc agatcattgt caccacaaca gttttgcaga atggagtgaa cttgtcacca 1380 gatggagcaa ttgattttgg tatcacttat gaggctgcat atgacacaga tcatagaatc 1440 ctcactgttc gacggagaaa tatcaaccca ggtgagttaa tacaaagagt tggtcgtata 1500 gggcgggata aaccaggaac gtttattcaa gttggcaaga ggttagatcg agaacaacca 1560 cccaatgctt gcacaacaac caacgctatt ttaatctcgt tcgctatgga gctagcccca 1620 tatgttggac cacatcttat tgaagacata aactgggtta cgagagagca aataaaaaca 1680 gctatgttat ttagcgcacc tttgctattt atgatacact acattcgaag agatggaaag 1740 atgttggaag ggttttacca ccaattcaaa ggactcctac tacggacaag cgaggtaata 1800 ctttgccatg atttaatttc tgaaccacag cggcacagtt accgtacttt acgagattac 1860 caactttctg gtgaaataga acacgatgaa cccttgccag ctattcctat tccattctac 1920 tcgaatgact ttgcggtgcc attttatatc gctcttggtc acataacagc agaggcgatt 1980 aaaccacgat ctttcacagt gagactccct gtacctaacg taaagaaagc ggtattaaga 2040 ttgtcaactt cagaggcgca agtggataga actattggaa tcttacaagt tcgattacaa 2100 caaattcgag aacgccttga taaattcaac actttgcgcg ctgaaacggc tgggttacgg 2160 ttgacaaacc tatttaacac atgttatacg agggcaacca gccagagcga aaagtcactt 2220 caagcctcgc tcattttagg tacagaactc ctctcatcct tggagattgc tcgtgctgag 2280 aaaaatgaca aagagctgga aaaattattg gctaacaatc ccatgcttag tgagtgtctc 2340 atttaccatg gaggacagga agctttcttg gagcaatatt tatttccaac ttttaaacac 2400 ccaattaaag cttacttagt ggcgattgct tgcctaacgg ttggcgttga ctgtctcggt 2460 tattattact taaagaggag agaaacctta atcatgcatg ccgggaagaa gcgtcgaact 2520 catgctcgtg aggaccggta taagcgaact ggcttaatgg ggcaggatga atcgagctat 2580 cactgggttg gaagtgaaaa agacattatt gacgactggg gagctgccta cgccaagaag 2640 aatgctggaa agaaaaagcc ctcagactgg gatgatggaa aacagcagtg ggattcacgt 2700 gaggggacat atacgaatgt tttcaaaaca ctatatgact tggacccaac gaaattcaag 2760 tatgt 2765 //