ID JQ975080; SV 1; linear; genomic RNA; STD; VRL; 2765 BP. XX AC JQ975080; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M16 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; 150ea8bb8d95c5c3e662e96d4336ac45. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M16" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="15-Aug-2004" FT /db_xref="taxon:53954" FT CDS <1..>2765 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K0I9J0" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0I9J0" FT /protein_id="AFU50451.1" FT /translation="SARSLFIDAGLCAVALSLVYCALQIIRKIFKRLSKMLHDDDTTRL FT AQYDEMRIMAKGNKQLIAMIDKMEDEQSESLVHHAQGKADNMYVKILAWISLFVGCFNV FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQDEQEDMKRLLDTRDNFIDFVYQHDEH FT DGSVDRESLDAWYTRICYQERVTEHPLKCGQELTLTRLNSTDIAESITRTSHNEFTVIG FT GVGTGKSTKLPGALSIYGPVLILVPSRELSVNLAASIEGVTQKVPSVYMHNCSIRGTSN FT ITIMTYGYALIFFYHNRIEMQKYKFIQMDECHEFSEHMICFYAWWKENSQYTKLVKTTA FT TPPGARIHNGFVDTNHEVIVQEIPSMTVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHTFYQIIVTTTVLQNGVNL FT SPDGAIDFGITYEAAYDTDHRILTVRRRNINPGGLIQGVGRIGRDKPGTFIQVGKRLDR FT EQPPNACTTTNAILISFAMELAPYVGPHLIEDINWVTREQIKTAMLFSAPLLFMVHYIR FT RDRKMLEGFYHRFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLSGEIEHDEPLPAI FT PIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL FT TVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQDESSYHWVGSEKDIID FT DWGAAYAKKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYV" FT mat_peptide <1..243 FT /product="P3 protease" FT mat_peptide 244..390 FT /product="6K1 protein" FT mat_peptide 391..2358 FT /product="CI protein" FT mat_peptide 2359..2502 FT /product="6K2 protein" FT mat_peptide 2503..>2765 FT /product="Vpg protein" XX SQ Sequence 2765 BP; 855 A; 569 C; 626 G; 715 T; 0 other; agcgctcgtt cgttattcat agatgctggc ctttgcgccg tggctttatc attggtttat 60 tgcgctctcc agatcattag gaagattttt aaaagattaa gcaaaatgct ccatgatgac 120 gacaccacac gactagcgca gtatgacgaa atgaggatta tggctaaagg taacaaacag 180 ctcatcgcaa tgatcgataa gatggaagat gaacaatcag aaagcttagt gcatcacgcg 240 caaggtaaag cggacaacat gtatgttaag attcttgcat ggatatctct cttcgttggc 300 tgctttaacg tgggattagc gaacgacata tattttgcgg tcaccaaata tcgcacactc 360 ttggacatcg ctacaacaag ctcacccgag tcattggtat ttcacgcaca agatgaacaa 420 gaggatatga aacggttgct ggacactcgt gataatttta tcgactttgt ctaccagcat 480 gatgagcatg atgggagtgt tgatagagag agtcttgacg cctggtatac gaggatttgc 540 tatcaagaga gggttactga acacccgctc aagtgtggtc aagagctcac tctcacaaga 600 ctcaatagca cggacatcgc agaaagcata acacgcacgt ctcataacga attcaccgtt 660 attggtggtg ttggaacagg gaagagtacg aaactccctg gtgcgttatc catttatggt 720 ccagtgttga ttctagtgcc ctcgcgagag ctatcggtta acctcgcagc tagcatcgaa 780 ggagttacac agaaagtccc aagtgtttac atgcacaatt gctcgatccg aggcacaagc 840 aacattacta tcatgacata tggttacgcg ctgattttct tttatcataa tcgaatcgaa 900 atgcaaaagt ataagtttat tcaaatggac gaatgtcatg aattcagcga acacatgatc 960 tgtttttatg cctggtggaa agaaaactcg caatacacca aactagtgaa gacgacagca 1020 acaccaccag gagcacgcat tcataatgga ttcgttgata ccaatcatga ggtgatagtg 1080 caagagattc caagtatgac agttgatgaa ttctgccgca aatctatcga tcgacacgtt 1140 gatggtttac aagctcggtt tccaaacgga ggacgaatac tcatttttgc cccatcacga 1200 aaggattgcg aatatattaa ggcctcactt attacgatgg ggagaacaaa aatttgggct 1260 gtataccgga aaagcacttt ggctggtgaa aagttgattg aggagcttaa taatgaccac 1320 actttttatc agatcattgt caccacaaca gttttgcaga atggagtgaa cttatcacca 1380 gatggagcaa ttgattttgg tatcacttat gaggccgcat atgacacaga tcatagaatc 1440 ctcactgttc gacggaggaa tatcaaccca ggtgggttaa tacaaggagt tggtcgtata 1500 gggcgggata aaccaggaac gtttattcaa gttggcaaga gattagatcg agaacaacca 1560 cccaatgctt gcacaacaac caacgctatt ttaatttcgt tcgctatgga gctagcccca 1620 tatgttggac cacatcttat tgaagacata aactgggtta cgagagagca aataaaaacg 1680 gctatgttat ttagcgcacc tttgctattt atggtacact acattcgaag agatagaaag 1740 atgttggaag ggttttacca ccggttcaaa ggacttctac tacgaacaag cgaggtaata 1800 ctttgccatg atttaatttc tgaaccacag cggcacagtt accgaacttt acgagattac 1860 caactttctg gtgaaataga acacgatgaa cccttgccgg ctattcctat tccattctac 1920 tcgaacgact ttgcggtgcc attttatatc gctcttggtc acataacagc agaggcgatt 1980 aaaccacgat ctttcacagt gagactccct gtacctaacg taaagaaagc agtattaaga 2040 ttgtcaactt cagaggcgca agtggataga actattggaa tcttacaagt tcgattacaa 2100 caaattcgag aacgccttga taaattcaac actttgcgcg ctgaaacggc tgggttacgg 2160 ttgacaaacc tatttaacac atgttatacg agggcaacca gccagagcga aaagtcactt 2220 caagcctcgc tcattttagg tacagaactc ctctcatcct tggagatcgc tcgtgctgag 2280 aaaaatgaca aagagctgga aaaattattg gctaacaatc ccatgcttag tgagtgcctc 2340 atttaccacg gaggacagga agctttcttg gagcaatatt tatttccaac ttttaaacac 2400 ccaattaaag cttacttagt ggcgattgct tgcctaacgg ttggcgttgg ctgtctcggt 2460 tattactact taaagaggag agaaacctta atcatgcatg ccgggaagaa gcgtcgaact 2520 catgctcgtg aggaccggta taagcgaact ggtttaatgg ggcaagatga atcgagctat 2580 cactgggttg gaagtgaaaa agacattatc gacgactggg gagctgccta cgccaagaag 2640 aatgccggaa agaaaaagcc ctcagactgg gatgatggaa aacagcagtg ggattcgcgt 2700 gaggggacat atacgaatgt tttcaaaaca ctatatgatt tggacccaac gaaatttaag 2760 tatgt 2765 //