Dbfetch
ID JQ975066; SV 1; linear; genomic RNA; STD; VRL; 2280 BP. XX AC JQ975066; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M117 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2280 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2280 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (20-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; e4bca934f285c93ea12f2bb2c3063438. XX FH Key Location/Qualifiers FH FT source 1..2280 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M117" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="03-Jun-2011" FT /db_xref="taxon:53954" FT 5'UTR 1..199 FT CDS 200..>2280 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="InterPro:IPR025910" FT /db_xref="UniProtKB/TrEMBL:K0III9" FT /protein_id="AFU50437.1" FT /translation="MATITKKQVWKPKEKVVSEPPKAEIQESRTTLMFNDYAEVEDFIQ FT RFPAGSVFWTTKGKPKTIVNNLFKATQYGLAYDIAAEVYVCPICMTCARNKVYFTTNHQ FT NCGELFRNKQAYISTSLRLEVVDTFDVFPRYATVEQEKLVGDWMADMEAYAHAEDDSID FT IPYQIFNDNTGEVEERIKQVDLSVHGEIVEEERTYKVKIARSNATMLPHQRRANRVIMR FT TNEIKELIDSTLEICHNRNIRVCFVDHERKKKLFPRIPLQHTVEPQALCDPRHDIIPAT FT EKFITQWKDVGEPTMHINEQWVQKGWSGVVLHREDLDAHPNLQEKCVDNLFVVLGRCKH FT GDLQNALKPDCCEELVFYTDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYW FT LAATYPFRVACKECSSIKSVREWVQNMRASKAYQLLRGGTSKHSRDLFRWLAAIQSELM FT TFNIRDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTH FT QSRDEQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDA FT RSDEAYEFDIMRGKGAIAIVAPGVFRKFDNIYSKPGVYNPEWTHLTPGGEIRTDFDYLR FT TDLKISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNP FT " FT mat_peptide 200..1273 FT /product="P1 protein" FT mat_peptide 1274..>2280 FT /product="Hc-Pro protein" XX SQ Sequence 2280 BP; 719 A; 460 C; 523 G; 578 T; 0 other; aaatgtaatt tcaaattgac tacaatcaac tctcttccaa tcgctcaagc tctcacaagc 60 cttcaaaagc gacctcaaga gcacagtagc caaactcggg tggagacacg ccgggtgcta 120 ctgtttcgtg cgattttaag agatcttagc tttggccaga gacagtttaa cgataagttc 180 acgagtcgtc tgggaagcta tggcaaccat caccaagaag caggtgtgga aaccgaagga 240 gaaggtggtt agcgaaccac caaaggctga aattcaggag tcgcgcacga ctctaatgtt 300 caacgattat gcggaagttg aggatttcat ccaacgcttc ccagctggaa gcgtcttctg 360 gacaacaaaa ggaaagccaa aaacgattgt aaacaattta tttaaggcta cacaatatgg 420 gctggcttat gatattgctg cagaagtata tgtgtgccct atatgtatga cttgtgcacg 480 caacaaagtg tacttcacta caaatcatca gaattgtggt gagctattta ggaacaagca 540 agcatacatc tcaacttctc tcagactcga ggttgtcgat acttttgacg tgtttccacg 600 ttatgcaact gttgagcaag agaagcttgt tggagattgg atggcggaca tggaggctta 660 tgctcacgct gaagatgatt caattgacat tccctaccag atcttcaacg ataacactgg 720 cgaagtcgaa gaaagaatca aacaagttga cttgtcagtt catggtgaaa ttgtggagga 780 agaacgcacc tacaaagtta aaatcgctcg ctccaacgcc acaatgttgc cacatcagcg 840 tcgtgcgaat cgcgtgataa tgcgaacaaa cgaaatcaaa gaattaatag attctacgct 900 tgaaatatgt cacaacagaa acataagagt gtgttttgtt gaccatgagc gaaagaagaa 960 attatttcca agaattccgc tacaacacac tgttgaacct caagcattat gtgaccctcg 1020 tcatgacatc attccagcta ccgaaaagtt cataactcaa tggaaggatg ttggggaacc 1080 tacgatgcac atcaacgagc aatgggttca aaaaggatgg agtggtgtag ttctacacag 1140 agaagattta gacgctcacc ccaatttaca agagaaatgt gtcgacaatc tttttgttgt 1200 acttgggagg tgtaagcatg gagatttaca aaatgcctta aaaccagatt gttgtgagga 1260 actggtgttt tacacagatg gacataaagc aaaatcacat ctattctggg atgcaattat 1320 gaagtgtcat cctgatgacc acaagtttgt tgacacgaca tggaacgatg aggcttatgc 1380 aaacatgggc tattggttag ctgcgacata cccatttagg gttgcttgca aagaatgctc 1440 gagcattaaa tctgttcgtg aatgggtgca aaacatgcga gcatcaaagg cttatcaact 1500 cttgcgaggt ggtacgtcga agcactcgcg agatttgttt cgatggctgg cggcgattca 1560 atctgagcta atgactttta atattagaga tgcgcaaaac acacaggagg accttaatag 1620 gaactttctt ggaacgatac ctattggtcc aattttcgac gtggcgaatc aaatgaatca 1680 ggcggtggtc gacattcaaa ggggtctaca acagatgcat aagctaatca cggacgcgga 1740 gttgacgcat caatcacgag atgagcaaat tttaaatgaa attgcacgac ttcgagggtt 1800 agaatttatg caaacggaga ggcttatgac gaatatgaag catgttgcta tgacctacag 1860 aaatctgata aacaccgcga gccaaccact gtcgatacac acaatgcgac aacttctact 1920 tgatgctcgc agtgacgagg catatgaatt cgatattatg cgaggaaagg gtgcaattgc 1980 aatagtcgca cctggcgttt ttcggaaatt tgataacata tactcaaaac caggtgtcta 2040 caatccagaa tggactcatt taacgccagg aggggagata cgaactgatt tcgattatct 2100 gcgcacagac cttaaaattt cgcaactgca tgacaaaatc cacaaatggc ctgagaatcc 2160 acttgttgac gaaacttgca ttgtatctga aggggagatg tcatatcatt tgtgtgaacg 2220 agtttatgag tgctttgttc ctataccaca cattttacgg gttggcaatc cacagaatcc 2280 //