ID   JQ975065; SV 1; linear; genomic RNA; STD; VRL; 2280 BP.
XX
AC   JQ975065;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M118 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-2280
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-2280
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (20-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; dd512dd2c42e5c0dbc71a1776e2207d7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2280
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M118"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="03-Jun-2011"
FT                   /db_xref="taxon:53954"
FT   5'UTR           1..199
FT   CDS             200..>2280
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="InterPro:IPR025910"
FT                   /db_xref="UniProtKB/TrEMBL:K0I9H5"
FT                   /protein_id="AFU50436.1"
FT                   /translation="MATITKKQVWKPKERVVSEPPKAEIQESRTTLIFNDYAEVENFIQ
FT                   RFPAGSVFWTVKGKPKTIVNNLFKATQYGLAYDIAAEVYVCPICMTCARNKVYFTTNHQ
FT                   NCGELFRNKQAYISTSLRLEVVDTFDVFPRYATIEQEKLVGDWMADMEAYAHAEGDSID
FT                   IPYQIFNSDTGEVEERIKQVDLSVHGEIEEVERTYKVKITRSNATMLPHQRRANRVIMR
FT                   TNEIKELIDSTLEICHNRNIKVSFVDHERKRKLFPRIPLKHTIEPQALCDPHHDIIPAT
FT                   EKFISQWKDVGEPTMHINEQWVQKGWSGVVLHKDDLEAHPSLQEKCVDNLFVVLGRCKH
FT                   GDLQNALRPDCCEDLVFYTDAHKARSHILWDAMMKCHPDDHKPIVNVWTDEAYENVGYW
FT                   LMATYPFKAICKECVNVKSIRDWVQNMRASKAYQFLRGGTSKHSRDLFRWLAVIQSELM
FT                   TFNIRDAQNTQEDLNRNFLGTIPIGPLFEIANQMNQAVVDIQRGLQQMHKLVTDVEITH
FT                   QARDEQILNEIARLRGLEFMQTEKLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDA
FT                   RSDEAYEFDIMRGKGAIAIVAPGVFRKFDKIYSEPGVYNVEWTHLTPGGELRTDFDYLR
FT                   TDLKISQLHDKIHKWPENPLIDETCIVSEGEMSYHLCERVYECFVPIPHIMRVGNPQNP
FT                   "
FT   mat_peptide     200..1273
FT                   /product="P1 protein"
FT   mat_peptide     1274..>2280
FT                   /product="Hc-Pro protein"
XX
SQ   Sequence 2280 BP; 734 A; 457 C; 519 G; 570 T; 0 other;
     aaatgtaatt tcaaattgac tacaatcaac tctcttccaa tcgctcaagc tctcacaagc        60
     cttcaaaagc gaccaaaaga gcccagtagc cgaactcggg tggagacacg ccgagtgcta       120
     ctgtttcaag cgatcaggag agattttagc tttggccaga gacagtttaa cgataagttc       180
     acgagtcgtc tgggaagcta tggcaaccat cactaagaag caagtgtgga agccgaagga       240
     gcgggtggtt agcgaaccac ctaaggctga aattcaagag tcgcgtacga ctcttatttt       300
     caacgactat gcagaagttg agaatttcat tcaacgcttc ccagctggaa gcgtcttctg       360
     gacggttaaa ggtaagccaa aaacgattgt aaacaatttg tttaaggcta cacaatacgg       420
     attggcatac gacattgcgg cagaagtata tgtgtgccct atctgtatga cctgcgcacg       480
     caacaaagtt tacttcacca ccaaccatca aaactgtggt gagcttttca ggaataagca       540
     ggcatacatt tcaacttctc taagactcga agttgtagac acttttgacg ttttcccacg       600
     ctacgcaact attgagcaag agaagttagt tggagattgg atggctgata tggaagctta       660
     tgcccacgcc gagggtgatt caattgatat tccatatcaa atcttcaata gtgacactgg       720
     cgaagttgaa gaacgcatca agcaagttga cttatcagta catggcgaga ttgaggaagt       780
     tgagcgcacg tacaaggtaa agataacgcg ttctaatgct acaatgttac cacatcagcg       840
     tcgggcaaac cgtgttatca tgcgaaccaa cgaaattaag gagcttatcg actcgacact       900
     cgaaatatgc cacaacagga acatcaaggt aagcttcgtg gatcatgaac gaaagcgcaa       960
     attatttcca cgaatcccgt tgaaacacac catagaacct caagctttat gtgacccaca      1020
     ccacgacatt atcccagcaa ctgagaaatt tattagtcag tggaaggatg tgggagaacc      1080
     aacgatgcac attaatgagc aatgggttca gaaaggatgg agcggtgtag ttctacacaa      1140
     agatgatctt gaagcgcacc cgagtctcca agagaaatgt gttgacaact tgtttgtggt      1200
     acttggaagg tgcaaacatg gggatttgca aaatgcactg aggccagatt gctgtgaaga      1260
     tttagtgttt tatactgatg ctcataaggc aaggtcacac attttgtggg acgcgatgat      1320
     gaagtgtcat ccagatgatc acaaacccat tgttaacgtt tggacagacg aagcttacga      1380
     gaacgtgggt tattggctaa tggctacata tccctttaaa gcaatatgca aagagtgtgt      1440
     aaatgtaaaa tcaattagag actgggttca aaatatgaga gcatctaaag cataccaatt      1500
     tttaagagga ggaacatcaa aacactcgcg ggatctcttc aggtggctcg cggttataca      1560
     atctgagctg atgactttca acatacgaga tgcccagaac acgcaagaag atctcaatag      1620
     aaatttcctt ggaacaatac caattggacc tctgtttgaa attgctaatc aaatgaatca      1680
     ggcagttgtt gatattcaac gcgggttgca gcaaatgcat aaactggtaa cagacgttga      1740
     gattacacat caagcccgtg atgagcagat cctgaacgaa attgcacggc ttcgtggttt      1800
     agaattcatg caaactgaaa aacttatgac caacatgaag cacgttgcaa tgacatatag      1860
     gaatttaatc aacacggcaa gccaaccatt gtcgattcac acaatgaggc aactcttatt      1920
     agatgcaaga agtgatgagg catatgagtt tgacataatg cgcggtaaag gagcaattgc      1980
     tattgtagca cctggagtgt tccggaaatt tgataagatt tattcagagc caggtgtgta      2040
     caatgtggag tggacgcatc taacaccagg tggagaacta agaactgatt ttgattactt      2100
     gagaactgat ctcaaaatct cccagttaca tgataaaatt cataaatggc cagaaaatcc      2160
     actaattgac gaaacgtgta ttgtctctga gggcgaaatg tcgtatcact tgtgtgaacg      2220
     agtttatgaa tgctttgtgc ctattccaca tatcatgcga gttggcaatc cacagaatcc      2280
//