ID   JQ975001; SV 1; linear; genomic RNA; STD; VRL; 1802 BP.
XX
AC   JQ975001;
XX
DT   07-JAN-2013 (Rel. 115, Created)
DT   07-JAN-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Maize rough dwarf virus isolate Sp segment S10, complete sequence.
XX
KW   .
XX
OS   Maize rough dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1802
RA   Ortiz V., Betbese-Lucas J., Lopez-Querol A., Romero J.;
RT   "Molecular characterization of genome segments 9 and 10 of Maize rough
RT   dwarf virus from Spain and evaluation of susceptibility of maize genotypes
RT   to this virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1802
RA   Ortiz V., Romero J.;
RT   ;
RL   Submitted (25-APR-2012) to the INSDC.
RL   Proteccion Vegetal, Instituto Nacional de Investigacion y Tecnologia
RL   Agraria y Alimentaria, Carretera de la Coruna Km. 7, 0, Madrid, Madrid
RL   28040, Espana
XX
DR   MD5; d108439530c1ad87529f8769f1668ae9.
DR   EuropePMC; PMC4956440; 27445367.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1802
FT                   /organism="Maize rough dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="Sp"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain:Gimenells"
FT                   /collected_by="V Ortiz"
FT                   /collection_date="15-Sep-2010"
FT                   /db_xref="taxon:10989"
FT   5'UTR           1..22
FT   CDS             23..1699
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L0L8P3"
FT                   /protein_id="AGB67524.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSDEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVRLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQIKTKVKTEDPDEYELSSLSTLRTNYDGTSASSPCTDKKFID
FT                   WYIKTLSKVEKESSLRRNELEEKSATGTSAVVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   TNKGEMSLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALITNATSASNSSHDHVQKIVLNKVTR"
FT   3'UTR           1700..1802
XX
SQ   Sequence 1802 BP; 584 A; 331 C; 328 G; 559 T; 0 other;
     aagttttggt gcctcaccca taatggctga cataagactt gacatagcgc ccgatcttat        60
     ccataatggt gtaccccaga gactctccga tacaataatt ttaaacaacc gaccaacaat       120
     tactctgtta tctcatttta acaacttatt tcatgaattg aacatagtca aagcacccca       180
     cgtcgcatct tcccaaacta cagttaattt gtacattcgt aaacatttgt tgacccgact       240
     tcatgataga cttcaaaccg ttgaaactag cactctacct aacatcacac aacttaagga       300
     tcatattcgc agtttctttc agaatgaaca ccaacccatt ttccagacct tgacaaataa       360
     tgatctaagt gatgaatttg taggtgtgac tactttcgga ctaagcttat tcgctacctc       420
     taaactcgat gctgaacaaa tagaacgcgt gcaaattgaa actttgactg aaggaaatgt       480
     tactctaaaa cccttttccg ctgatggttt ggaagttatt ctcgatgata gttatattgg       540
     tatcgttggt aaaattccag gtttagaagt acataaatta ctagataaat gttgtcgtga       600
     agttcctgct caaatgggaa tacttactga tgaagttaga ctgttaatgc gaactggtaa       660
     attaagaatt gatggtggtt atgatttcaa ttgtcctgca agtactacag acgttactca       720
     ctacggtgga tatgatcaat tttcacgtca aatgtttgaa cgtttaaatc tcttttacaa       780
     tattagtctt agcataatac ccgtttccgc tttaaaaacc gttcatctat ttgaaaaaga       840
     attaagtgtt ttggatgcag acaaatcttt gcttgaacaa acttggagcg cagtagcgtc       900
     attcgttgaa acttggcaaa ttaagactaa agttaaaact gaagatcctg atgagtatga       960
     actatccagc ttgtctactc tacgcactaa ttatgatggt acttctgctt ctagtccttg      1020
     tactgacaaa aaattcattg actggtatat taaaacgctt tccaaagtag agaaagaatc      1080
     gtcgttacgt cgaaacgaat tagaagagaa aagtgctact ggtacttccg ctgtagtaaa      1140
     gaaagtcaaa attcattttt ccgttcaata tttcgacgaa tttaaagtta atggacatga      1200
     gaaaagtatt gtagttcaaa ctaataaagg tgaaatgtct ttagattatt accgtaaaat      1260
     tggagaagtg ctgagcgcaa tttggaaacg tggtaagtca ttagctgtcc cttgttttga      1320
     ttatattaaa ttaggtgtag aaaaagcgtt tcatttagcc cctgtaatta tgaagaagta      1380
     taatttgacg attgatgaca ttatcaactt tatcgataaa ggaccctctt atctggctaa      1440
     attagacaag attgatgact ggtcactaat ttcaaaactc attattacca gcgttttgcc      1500
     caacattatt caagccgttt acaaaacaga cccaagtaat aatgttatga actcagtaat      1560
     tattagtaga gcgaacaact tattgaaatc tgatcgagac aggctattga agaaggcact      1620
     tattactaat gctacatctg ccagcaactc cagtcatgat catgtccaga agattgtttt      1680
     aaacaaagtg acaagatgac caatgggagt acatcattag tgcgactagt tcagtgctgt      1740
     gcggtcttca gttcattatc gatgccgagt gacgacggct agggggaaat gcagctattg      1800
     tc                                                                     1802
//