ID   JQ975000; SV 1; linear; genomic RNA; STD; VRL; 1899 BP.
XX
AC   JQ975000;
XX
DT   07-JAN-2013 (Rel. 115, Created)
DT   07-JAN-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Maize rough dwarf virus isolate Sp segment S9, complete sequence.
XX
KW   .
XX
OS   Maize rough dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1899
RA   Ortiz V., Betbese-Lucas J., Lopez-Querol A., Romero J.;
RT   "Molecular characterization of genome segments 9 and 10 of Maize rough
RT   dwarf virus from Spain and evaluation of susceptibility of maize genotypes
RT   to this virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1899
RA   Ortiz V.;
RT   ;
RL   Submitted (25-APR-2012) to the INSDC.
RL   Proteccion Vegetal, Instituto Nacional de Investigacion y Tecnologia
RL   Agraria y Alimentaria, Carretera de la Coruna Km. 7, 0, Madrid, Madrid
RL   28040, Espana
XX
DR   MD5; 2c543d2dd85a057f7d4f1e0ed9a9e372.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1899
FT                   /organism="Maize rough dwarf virus"
FT                   /segment="S9"
FT                   /host="maize"
FT                   /isolate="Sp"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain:Gimenells"
FT                   /collected_by="V Ortiz"
FT                   /collection_date="15-Sep-2010"
FT                   /db_xref="taxon:10989"
FT   5'UTR           1..50
FT   CDS             51..1094
FT                   /codon_start=1
FT                   /product="nonstructural protein"
FT                   /note="ORF1"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:L0LAN5"
FT                   /protein_id="AGB67522.1"
FT                   /translation="MADQERRTFGSYKIEELTIKNDQPNRNTNTSNSQSTENRLSTKKI
FT                   PLLDDGIFELLNYLIDGTNFDKTCYCGFNYSHLPNLERNFNVASIYVRENFELCTEHLN
FT                   LKDYDRQANISVKSPDFTLFLEYVVKPSPEPESSVQEKDKDEASKQTPPKVADVKEEKI
FT                   TVEMSLLPILNRESEETLNSEILDGEAAVVNVFKMYIKGFLMYLGENPNSYDRQLNIEK
FT                   YRPLLISILGYEHLIGTKVPNKEVNHIFYQLATFDNYPFDLLRFQLSSLISTPALIREK
FT                   IAKEGLFKVITSNTLRGAPRQTVLFRGINGSESFLNMKRYRRFRTRIVGNVACVIKSDF
FT                   SALKLDV"
FT   CDS             1159..1788
FT                   /codon_start=1
FT                   /product="nonstructural protein"
FT                   /note="ORF2"
FT                   /db_xref="GOA:L0L9G3"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:L0L9G3"
FT                   /protein_id="AGB67523.1"
FT                   /translation="MNPQSSVNIDTYTFNCPFELAKIQIESMKPIMQDFSNFDDIFERA
FT                   LSDSEIDDRVEQLEVDVESKVDPIVRRRYGKIGHIIVMIISFVFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGIFSIIFTILFYFLLCVCIYLIYYFFGDQIFSAYDTLNQIDGSTFINST
FT                   QVEEKVKNIIHDGSLFFGTRDQATGQINEIETQVINGGTVNYTLFN"
FT   3'UTR           1789..1899
XX
SQ   Sequence 1899 BP; 604 A; 334 C; 316 G; 645 T; 0 other;
     aagtttttgg cctggaactg acacattcct acaggaacga gcgtaagaga atggcagacc        60
     aagagcggag aacgtttgga tcatataaaa tagaagaatt aacaattaaa aacgaccaac       120
     caaatagaaa tacaaacaca tcaaattctc aatccactga aaatcgtctt tcgaccaaga       180
     aaatccccct actcgacgat ggtatttttg aacttttgaa ctaccttatt gacggaacca       240
     atttcgacaa aacttgctat tgtggtttca attattccca tcttcccaac ttagaacgca       300
     actttaacgt tgcatcaatt tacgtccgtg aaaattttga attatgcact gaacatttaa       360
     atttaaaaga ttatgataga caggcaaaca taagcgtaaa atctcctgac ttcactttgt       420
     ttttagaata cgttgtaaag ccgtcacccg aaccagaatc ttccgttcaa gagaaagata       480
     aagacgaagc ttcaaaacag acccctccta aagttgctga tgttaaagaa gagaagataa       540
     ccgttgaaat gtctttatta ccaattttga atcgtgaatc tgaagaaacg ctaaattccg       600
     aaattcttga tggtgaagct gctgtcgtta acgtgtttaa aatgtatatt aaaggttttt       660
     tgatgtatct tggtgaaaat ccgaattcat atgatcgtca gttgaacatt gaaaagtacc       720
     gtcctttgct gatttcaatt cttggatacg aacatctcat cggaacaaaa gtcccaaaca       780
     aagaagtcaa tcatattttt tatcagttag ctacttttga caactatcct tttgatttgc       840
     tgagattcca actctcttca cttatttcaa cgcctgcttt aatccgcgaa aaaatagcta       900
     aagaaggatt gttcaaagtt atcacatcga acaccctacg tggtgcccct cgtcaaactg       960
     tcttatttag aggaattaac ggaagcgaat ctttcctaaa catgaaacga tatcgtcgat      1020
     tcagaacaag gattgttggc aatgttgctt gtgtcattaa gtctgatttt tctgctttga      1080
     agcttgacgt ttgatatttt atatttttca ttccaataat tgaatatcac tggttgatga      1140
     accactttcc cttgttttat gaatccacaa tcttcagtga atattgatac ttatacattt      1200
     aactgtcctt ttgaactagc gaagatacaa attgaatcaa tgaaacctat catgcaagat      1260
     ttcagtaatt ttgatgacat tttcgaacgt gcactatctg attctgagat tgatgatcga      1320
     gtagaacagc ttgaagttga tgttgaatcg aaggttgatc ctattgtgag aagaagatat      1380
     ggtaaaatcg gacatattat cgttatgatt atcagttttg tgttttttgg catttttaag      1440
     ctcactctca aaatgtttta tcatttattt cgttgtgtgt gttgtaatcc tttaattaga      1500
     ggtatattta gcatcatttt taccatatta ttttactttt tgttatgtgt gtgcatttat      1560
     cttatttatt atttctttgg agatcaaatt ttctcagcgt acgacacttt aaatcaaatt      1620
     gatggttcta cttttataaa ttctactcaa gttgaagaga aagtgaaaaa cattattcat      1680
     gatggttccc tcttctttgg cacacgtgat caagctacag gtcaaattaa tgaaatagaa      1740
     actcaagtta taaacggtgg tactgtaaat tatactcttt ttaattaaca gctattttgt      1800
     gtgactctga aaatattcac gctcgcaagt cgattttctt acagttattt cttttgagac      1860
     ataacaaact cgttgtcaag ccggctaaca gctgatgtc                             1899
//