ID   JQ968545; SV 1; linear; genomic RNA; STD; VRL; 1040 BP.
XX
AC   JQ968545;
XX
DT   29-JUL-2012 (Rel. 113, Created)
DT   05-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Velvet tobacco mottle virus clone PIK20 RNA dependent RNA polymerase (RdRp)
DE   gene, partial cds; and coat protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Velvet tobacco mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
XX
RN   [1]
RP   1-1040
RX   DOI; 10.1007/s11262-012-0801-2.
RX   PUBMED; 22983896.
RA   Arthur K., Collins N.C., Randles J.W.;
RT   "Mutation rate in Velvet tobacco mottle virus varies between genomic region
RT   and virus variant but is not influenced by obligatory mirid transmission";
RL   Virus Genes 45(3):575-580(2012).
XX
RN   [2]
RP   1-1040
RA   Arthur K.R., Collins N.C., Randles J.W.;
RT   ;
RL   Submitted (22-APR-2012) to the INSDC.
RL   School of Agriculture, Food and Wine, University of Adelaide, Waite Rd.,
RL   Adelaide, SA 5064, Australia
XX
DR   MD5; e936cf844e2d6a5d106f2afe35a4500e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1040
FT                   /organism="Velvet tobacco mottle virus"
FT                   /isolate="VTMoV-K1"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /isolation_source="mirid insect transmission 20 months"
FT                   /collected_by="Kieren Arthur"
FT                   /collection_date="Jul-2010"
FT                   /clone="PIK20"
FT                   /PCR_primers="fwd_name: vtmov-cpf5, fwd_seq:
FT                   gatttcccgcaacaagttttggctca, rev_name: vtmov-cpr4, rev_seq:
FT                   cgcttgcctagcggtcagtt"
FT                   /db_xref="taxon:12473"
FT   gene            <1..438
FT                   /gene="RdRp"
FT   CDS             <1..438
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /db_xref="UniProtKB/TrEMBL:I7B0S8"
FT                   /protein_id="AFN89811.1"
FT                   /translation="NKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQ
FT                   VGLVPDKTYWEEDHPADYVEETHQESGQADDTGNLAERADFCSVPTTETPKVDAARAEF
FT                   YSYGPNGWSCDIPEATHVNQWPLWGYSSSFGGGFGSPIWDY"
FT   gene            188..1033
FT                   /gene="CP"
FT   CDS             188..1033
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E2IZN3"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E2IZN3"
FT                   /protein_id="AFN89812.1"
FT                   /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM
FT                   APMAGAVIYRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG
FT                   SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS
FT                   GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT
FT                   LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR
FT                   "
XX
SQ   Sequence 1040 BP; 259 A; 250 C; 255 G; 276 T; 0 other;
     aacaagtttt ggctcacaag ctggcctaaa accttgtaca ggttcctaga ctctccctct        60
     gaaaattttc atgatcttga aagggaactt ggctcatgtc ccaagtgggc caagataaag       120
     gattattgtt gtcaggtagg actggtccct gacaaaacat attgggaaga agatcaccct       180
     gctgactatg tcgaagaaac tcaccaagaa tcaggtcaag cagatgatac aggcaacctt       240
     gccgaaagag cagacttctg ctcggtcccg acgacggaga cgccgaaggt cgacgcagca       300
     agggcagagt tctacagtta tggccccaat ggctggagct gtgatatacc ggaagcgacc       360
     catgttaatc aatggccgct ctggggttac agttcgtcat tcggaggtgg ttttggtagt       420
     ccaatctggg actactaact tctcggccac ttctgttact ctcgcgccta acactttcac       480
     ctggttagct gtacaaggat ccctctattc taaatggagg tggatatcgc ttagagccac       540
     gtatgtgccc gagaccgctt ctacgactcc cggaactgtg gcaatgggtt tccagtatga       600
     caatactgat gtcctaccca ctggaaccgc tggtatgtct agtttgcatg gttttgtgtc       660
     aggcgctccg tggtcaggct ttagtggttc taaactcctc gctgaaagtc ccaccactcc       720
     catccctgct ggagcaatcg caactcgact tgactgtcaa aatttcggtc tcaaatggta       780
     tcagtacaag tctgttatac ctgctggtga ttctggaaac atctatattc cagctcagtt       840
     gattgtcggt accctgggga ctggttcaac tttgagatat ggtgaagtgc acatccagta       900
     tgagattgag tttattgagc cccttcctcc ttcggtgaac actctcagag atatttactc       960
     taggatgatc ctaagttcgg cgtcagatga aaggaaaggt gagaagtcta gtcagacttt      1020
     aactgaccgc taggcaagcg                                                  1040
//