Dbfetch
ID JQ963629; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JQ963629; XX DT 18-JUL-2012 (Rel. 113, Created) DT 18-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate SZ1 segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Tang Y.F., He Z.F.; RT "Molecular characterization of Cotton leaf curl Multan virus and its RT satellite DNA that infects Hibiscus rosa-sinensis"; RL Unpublished. XX RN [2] RP 1-2737 RA Tang Y.F., He Z.F.; RT ; RL Submitted (21-APR-2012) to the INSDC. RL Plant Protection Research Institute, Guangdong Academy of Agricultural RL Sciences, Jinying Rd No. 7, Tianhe District, Guangzhou, Guangdong 510640, RL China XX DR MD5; 6870588cb43f25822d567356c22a5781. XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Cotton leaf curl Multan virus" FT /segment="DNA-A" FT /host="Hibiscus rosa-sinensis" FT /isolate="SZ1" FT /mol_type="genomic DNA" FT /country="China" FT /collected_by="Z.F.He" FT /collection_date="23-Oct-2011" FT /db_xref="taxon:223252" FT gene 116..481 FT /gene="AV2" FT CDS 116..481 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5HBX9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5HBX9" FT /protein_id="AFN54995.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNISDVQKSGCSKGL" FT gene 276..1046 FT /gene="AV1" FT CDS 276..1046 FT /codon_start=1 FT /gene="AV1" FT /product="capsid protein" FT /db_xref="GOA:A5HBY0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5HBY0" FT /protein_id="AFN54994.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAVPIVRVTKQQAWT FT NRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1049..1453) FT /gene="AC3" FT CDS complement(1049..1453) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:I6XRR8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6XRR8" FT /protein_id="AFN54998.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLVLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY" FT gene complement(1146..1598) FT /gene="AC2" FT CDS complement(1146..1598) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:I6YD03" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6YD03" FT /protein_id="AFN54997.1" FT /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSCLKGIQNPSPQISEQSRCNFN" FT gene complement(1495..2586) FT /gene="AC1" FT CDS complement(1495..2586) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /db_xref="GOA:I6YL46" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6YL46" FT /protein_id="AFN54996.1" FT /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK FT VCRELHEDGSPHLHVLIQFEGELICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2127..2429) FT /gene="AC4" FT CDS complement(2127..2429) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1K010" FT /protein_id="AFN54999.1" FT /translation="MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN" XX SQ Sequence 2737 BP; 704 A; 548 C; 644 G; 841 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cccctattta tgagattgct ccctcaaagc 60 taaataacgc tcccgcccac tataagtact tgcgcactaa gtttcaaatt caaacatgtg 120 ggatccattg ttaaacgaat ttcctgatac ggtgcacggg tttcggtgta tgctttctgt 180 caaatatttg caacttttgt cgcaggatta ttcaccggat accctaggtt acgatttaat 240 acgggattta atctgtattc tacgttcccg taattatgtc gaagcgagct gcagatatcg 300 tcatttcaac gcccgcgtcg aaagtacgtc ggcgtctgaa cttcggcagc ccatacacca 360 accgtgttgc tgtccccatt gtccgcgtca caaaacaaca ggcatggaca aacaggccta 420 tgaacaggaa gcccagaata tatcggatgt acagaagtcc ggatgttcca aagggttgtg 480 aaggcccatg taaggtacag tcttttgagt ccagacatga tgttgttcat attggtaagg 540 taatgtgtat ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt 600 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat ataaagacca 660 ggaatcacac gaattcggtc atgttctttt tagttcgcga tcgacgacct gttgacaaac 720 ctcaggattt tggtgaggta ttcaatatgt ttgataacga acccagtaca gcaactgtga 780 agaatagtca tagggaccgt tatcaggtgt tgaggaaatg gcatgcaacc gttacgggtg 840 gtcaatatgc gagtaaggaa caggctttgg tcaagaagtt tgtcagagtt aacaattatg 900 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tacggaaaat gcgttaatgc 960 tttatatggc ttgtacccac gctagcaacc ctgtttatgc tacgttgaag attaggatat 1020 atttttatga ctctgtaacg aattgatgtt aataaagttt gaattctatt tctgaatatt 1080 gatctacata catagtttgt tggattacat tgtacaacac atgttctaca gctttaataa 1140 ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata 1200 cccttaagac aagaccagtc tgagggtgta aggtcgtcca gattcggaag gttagaaaac 1260 acttgtgcag tcccagagct ttccgagtgt tgtagttgaa ctggattcgg atcgtgagta 1320 tgtccatatt cgtcgtgaat ggacggttga agtggctgat tatcttgaaa taaaggggat 1380 ttggaacctc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg 1440 tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc gcattcaaga 1500 tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt gattggaagc 1560 tgagtacagt ggtccttcga gagtgatgaa gatcgcattt tttagggccc aattctttaa 1620 tgctgtgttt ttttcctcgt tgaggaattc cttataactg ctgttgggac caggattgca 1680 caagaagatt gtcggtattc cgcctttaat ttgaactggc ttaccgtatt ttgtgttgga 1740 ctgccagtct ctttgggccc ccatgaactc tttgaagtgt ttgaggaaat gcgggtcgac 1800 gtcatcaatg acgttgtacc aggcgtcgtt actgtatact ttgggactca ggtccagatg 1860 tccgcacaaa tagttatgtg gtcccaatga cctagcccac atcgtctttc ccgtacgact 1920 atctccctca attactatac tccgaggtct aaggggccgc gcagcggcat cgacaacgtt 1980 atccaacgcc caaacttgaa gttcttctgg aacttgatcg aacgaagaaa aagaaaaagg 2040 agaaacataa ggagctggtg gctcctgaaa gatcctgtct agatttgcat ttaaattatg 2100 aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag cctctgactt 2160 acttcccgcg ttaagcgctg cggcgtaagc gtcgttggct gtctgttgtc ctcctcttgc 2220 tgatcttcca tcgatctgaa actctcccca ctcgagagtg tccccgtcct tgtcgatgta 2280 gtccttgaca tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgacct 2340 ggttggggat accaggtcga agaatctgtt attcgtgcag atgagttcgc cctcgaactg 2400 gatgagcaca tggagatgag ggctcccatc ttcgtgtaac tctctgcaga ctttgatgta 2460 ttttttattc gagggtgtgt tgatggcttg aatttgggaa agtgcttcct ctttagtgag 2520 tgagcactgt ggataagtga ggaaataatt tttggcttgt attttaaaac gtttgggggg 2580 agccattgac tttggtcaat tggagacaac tgattggatt ttactctggc aattggagac 2640 tggagacaat ttatagtgtc tccaaatggc attatcgtaa tttgagaaat catttcaaaa 2700 tcctcacgct ccaaaaagcg gccatccgta taatatt 2737 //