ID JQ954859; SV 1; circular; genomic DNA; STD; VRL; 2746 BP. XX AC JQ954859; XX DT 15-JUL-2012 (Rel. 113, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Papaya leaf curl virus isolate Aster Lucknow, complete sequence. XX KW . XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Srivastava A., Raj S.K., Kumar S., Snehi S.K.; RT "New record of Papaya leaf curl virus and Ageratum leaf curl beta satellite RT associated with yellow vein disease of aster in India"; RL New Dis. Rep. 28:6-6(2013). XX RN [2] RP 1-2746 RA Raj S.K., Snehi S.K., Srivastava A.; RT ; RL Submitted (18-APR-2012) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; cd49fd966fd6f15bc5c0ad04b63f5712. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Papaya leaf curl virus" FT /segment="DNA-A" FT /host="Aster alpinus L." FT /isolate="Aster Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="S.K. Snehi" FT /collection_date="Dec-2011" FT /proviral FT /db_xref="taxon:53260" FT gene 150..506 FT /gene="AV2" FT CDS 150..506 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:I6XQ38" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6XQ38" FT /protein_id="AFN41345.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKDQSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 310..1080 FT /gene="AV1" FT CDS 310..1080 FT /codon_start=1 FT /gene="AV1" FT /product="capsid protein" FT /db_xref="GOA:I6WF60" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6WF60" FT /protein_id="AFN41346.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKTRAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTINHTKSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDSYQVLRKWHATVTRGPYASRHQALVMRFVRLNNYVVYNQHEAGRYGNH FT SEMPLLMYMACTHASNPVYATSKIRIYFYDSVTN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:I6XKP5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6XKP5" FT /protein_id="AFN41347.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMKEDI FT ITVQIQFNYNLRKALGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLNNLGVISINN FT VIRSVDHVLWDVLEHIVYVEQSYSIKFNIH" FT gene complement(1222..1626) FT /gene="AC2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:I6XC82" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6XC82" FT /protein_id="AFN41348.1" FT /translation="MRSSSPSKAHSTQVPIKVKHRLAKKGTRRRRVDLPCGCSYFIALA FT CNDHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRTPQPAISYERGHHHRPNTVQLQP FT EESVGDTQMFSSLPNLDDFTASDWSFLKSL" FT gene complement(1529..2614) FT /gene="AC1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:I6WQT1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6WQT1" FT /protein_id="AFN41349.1" FT /translation="MPRLNSFCVNAKNIFLTYPICPLPKEQLLEILQSINCPSDKLFIR FT VAQEKHQDVSLHIHALIQFKGKSKFGPPKKFDGSHPNNSTQFHPNFQGTKSSSDVKSYI FT EKDSDYIDWGQFQIDGRFARGGQQTVNDAAAEALNAGSADAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFLSSSFNQVPEELEEWAAENVLGAAARPLRPISIVIEGE FT SRTGKKIWARSLGAHNYLCGHLDLGPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALRNWALKNAIFVTLEGPL FT YSGSNQSEAQASQEGDEASTC" FT gene complement(2200..2457) FT /gene="AC4" FT CDS complement(2200..2457) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6XQ44" FT /protein_id="AFN41350.1" FT /translation="MCLCISMPSSSSKVNPSSAPLKNSMAVTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP" XX SQ Sequence 2746 BP; 762 A; 554 C; 612 G; 818 T; 0 other; taatattacc ggatggccgc gattttttcc gtgggccccc aacgcattaa ctgacaatga 60 catgtggacc aattaaaatc gtccctcata gcttaattat ttcatggtcc cctatttaaa 120 cttgggctcc aagtagtctc ttatgcacaa tgtgggatcc attagtaaac gagtttcctg 180 aaaccgttca cggttttagg tgtatgttag cagttaaata tctgcagcta ctagaaaata 240 catattctcc agacactctg gggtacgatt taatcaggga tttgatctcc gttattaggg 300 ctaagaatta tgtccaagcg accagcagat ataatcattt ccacgcccgc ctcgaaggta 360 cgccgccgtc tcaacttcga cagcccttat gccagccgtg ctgctgcccc cactgtccgc 420 gtcacaaaga ccagagcatg ggcgaacagg cccatgaaca gaaagcccag gatgtacagg 480 atgtacagaa gtccagatgt ccctagagga tgtgaaggcc catgtaaggt ccagtcgttt 540 gagtccagac atgacattca gcatataggt aaagtcatgt gtgtcagtga tgttacccgt 600 ggaactgggc tgacccaccg agtgggtaaa aggttttgtg ttaaatccgt ttatgtcttg 660 ggtaagatat ggatggacga gaatattaag actataaatc acacgaaaag tgtgatgttt 720 tttttagtta gggatcgtag acctgtggat aaacctcaag attttggtga ggtttttaac 780 atgtttgata atgagcccag tacggctact gtgaagaatg ttcatcgtga tagttatcaa 840 gtgcttcgga aatggcatgc aactgttacg aggggaccat atgcgtccag gcatcaggct 900 cttgtgatga ggtttgttag gcttaataat tatgttgtgt ataaccagca tgaagctggc 960 aggtatggaa atcattctga gatgccgcta ctgatgtata tggcatgtac tcatgcctct 1020 aacccagtgt atgctacttc gaagatacgg atctatttct atgattccgt aacaaattaa 1080 tgaatattaa attttattga atatgattgt tctacatata caatgtgttc taatacatcc 1140 cataaaacat gatcaactga tctgattaca ttattaatac tgataactcc taaattattt 1200 aaatatttta aaacttgagt cttaaagact cttaagaaac gaccagtctg aggctgtgaa 1260 gtcatccaga ttcggtagac tagaaaacat ttgtgtatcc ccaacgcttt cctcaggttg 1320 taattgaact gtatttggac ggtgatgatg tcctctttca taagaaatgg ccggttgtgg 1380 tgttctgtta tcttgaaata caggggattt tgaatctccc agataaacac gccattctct 1440 gcttgagctg cagtgatgag ttcccctgtg cgtgaatcca tggtcgttgc aggctaatgc 1500 tatgaagtat gaacacccac aagggagatc aacacgtcga cgcctcgtcc ccttcttggc 1560 tagcctgtgc ttcactttga ttggaacctg agtagagtgg gccttcgagg gtgacgaaga 1620 tcgcattctt taaagcccaa tttctgagtg cattattctt ctcttcatcc aagaactctt 1680 tataacttga attaggtcct ggattgcaga ggaagatagt gggaattccg cctttaattt 1740 gaactggctt tccgtacttg gtatttgatt gccagtccct ttgggccccc atgaattcct 1800 taaagtgctt taggtagtgg ggatctacgt catcgatgac gttataccac gcatcattgc 1860 tgtaaacttt ggggcctaga tctaaatgac cgcataggta attatgagcc cctaatgacc 1920 tagcccaaat ctttttaccc gtacgacttt ctccctctat gacaatactt atgggtctta 1980 gcggccgcgc agcggcaccg agaacattct cggcagccca ttcctcaagt tcttcaggaa 2040 cttgattaaa agaagaagat aaaaaaggag aaacataaac ctctacagga ggtgtaaaaa 2100 tcctatctaa attacatttt aaattatgat attgaaaaat aaaatcttta gggagttttt 2160 ccctaattat tgctaaagct gcgtcagctg aacctgcatt tagggcctct gctgctgcat 2220 cattaactgt ctgttgacct cctcgagcaa atcttccatc gatctgaaac tgaccccagt 2280 cgatgtaatc actgtccttc tcgatgtagg acttgacatc agagctggac ttagttccct 2340 ggaagtttgg gtggaattgg gtggagttat tagggtgact gccatcgaat tttttagggg 2400 ggccgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga gacacatctt 2460 ggtgtttttc ttgtgccact ctgataaata atttatcaga tgggcaattt attgactgaa 2520 gaatctcgag caattgctct ttgggtaatg ggcatattgg ataagtgagg aagatatttt 2580 tggcattaac acaaaaagag ttaagacgag gcatattgaa ttggggacac tcaaaactct 2640 gaggaatggg ggactctggg gacgcattta tatggtgtcc ccaaatggct tattcgtaat 2700 tttgaaagaa aattcaaaat tcaaaatccc aaagcggcca tccgta 2746 //