ID   JQ954736; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
XX
AC   JQ954736;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M61 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; 57417882a7be0f48a7e2b30d957c6a8d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M61"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="22-Nov-2008"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1579
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains NIa-Pro protein and NIb protein"
FT                   /db_xref="GOA:K0I7W8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:K0I7W8"
FT                   /protein_id="AFU50428.1"
FT                   /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT                   LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT                   VSQGSGNPVGFPSNRGELRQTGAAMEMTEEEKQQALASETIVMHAQARIDISHVEKNVG
FT                   LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTTSGHYTLPRPLVHKILNHDL
FT                   VIFKMPGDFPPMKKISCFRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT                   ALKSVPGFCGGPIMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNDEVIEVLQSESSQTL
FT                   IPWLFNEDMVQWKGVNSNLDPRNFPIAKTHTELIFHGAEIQHGTDKYFGDNLTIQGRIN
FT                   QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT                   NLGCLASAVDKVIGHLEDQGFTPKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLVP
FT                   ATHEELST"
XX
SQ   Sequence 1579 BP; 502 A; 330 C; 349 G; 398 T; 0 other;
     attgggatga tggaaaacag cagtgggact cgcgtgaggg cacttacaca aacgtattta        60
     aaacactgta tgatctggat ccaaccaagt ttaagtatgt tgttgctgaa gctccagggt       120
     atcgatttaa gaagaggcta aacagacaag agaagaagag attgtcagaa accattatcg       180
     aagggattag atctcaaatg gcctcagagg gagtgtatga ttatcctgaa gtgactcaag       240
     caacattgta cttgtttggc gatcctggtc aaccagctaa gaaagtcatc ttaacgccac       300
     acaacccact agctgtctca caaggaagcg gcaaccctgt tggatttcct agtaaccgtg       360
     gagaacttcg acaaactgga gcggctatgg aaatgactga agaagaaaaa caacaagcac       420
     ttgcgagtga gactatagta atgcatgccc aagcgcggat agacatttca catgttgaga       480
     aaaacgttgg gctaatttca gacggatcgt acacctcgca atgcttcatc acacagagct       540
     ggtgtgttgc tccttatcac ttagcgagtt attttaaaca aaccagcaac acattaacaa       600
     taaccacgac ttctggacat tacacactac ctcgaccact agtacacaaa atactcaacc       660
     atgatttggt catcttcaaa atgcctggcg actttccacc gatgaagaaa atttcatgtt       720
     ttcgaaaacc caacccagat gatgagattg ttttgatcac aactaagaga acaccatctg       780
     gtttgaggac cacattctca tcatcattct atattagtga acaccattct ggaatgatgc       840
     aatatgcgct caaatcagtg ccagggttct gtggaggacc aatcatgtca ataaaagatg       900
     gtcagatcat tggatttcat tcggcagctc gggtagtaaa catgcaagat cgtggttcaa       960
     cattcacttg tgtaaacgat gaagttatcg aagtgttgca atcggaaagc tctcagacgc      1020
     taatcccgtg gttattcaat gaagatatgg ttcaatggaa aggtgtcaat tcaaatcttg      1080
     acccgaggaa ctttccaatt gcaaagacac acacggagct tatatttcat ggtgctgaga      1140
     tacaacatgg aacggataag tattttggcg acaacctcac aatccaagga cgaatcaacc      1200
     aatcatttaa caacaggcat gtgataaaag gatcagacac gtattttgat gaattcgtca      1260
     tgcatgtgag acctgcgccg gagcgagtgg acgcgcactt accaagtgat cttagtgtgg      1320
     aagccttctt taaggatttt cttaagtatg ccacacctgt tgaacttgga cgagtgaatt      1380
     tgggttgctt ggcgagcgct gtggacaagg ttattggaca tcttgaagat caaggattca      1440
     caccaaaaga gttccaagtt gaaacaaatt tctacacact tcttaattcg atgaacttgg      1500
     acacggcaat gggagcctta taccagacca agaagcgcga tgttcttgta ccagctacac      1560
     acgaagagtt gagcacttg                                                   1579
//