ID   JQ954729; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
XX
AC   JQ954729;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M118 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; cdd20c35cf8479e814e34169c39e385f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M118"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="03-Jun-2011"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1579
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains NIa-Pro protein and NIb protein"
FT                   /db_xref="GOA:K0I9F4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:K0I9F4"
FT                   /protein_id="AFU50421.1"
FT                   /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT                   LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT                   VSQGSGNPVGFPSNRGELRQTGPAMEMTEEEKQQALTSETIVMHAQARIDISHVEKNVG
FT                   LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTSSGHYTLPRPLVHKILNHDL
FT                   VIFKMPGDFPPMKKISCLRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHHSGMMQY
FT                   ALKSVPGFCGGPIMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNEEVIEVLQSESSQTL
FT                   IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEVQHGTDKYFGDNLTIQGRIN
FT                   QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT                   DLECLASAVDKVISHLENQGFAAKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLMP
FT                   ATHEELST"
XX
SQ   Sequence 1579 BP; 500 A; 316 C; 364 G; 399 T; 0 other;
     attgggatga tggaaaacag cagtgggact cacgtgaggg gacatatacg aatgttttca        60
     aaacactata tgacttggac ccgacgaaat tcaagtatgt tgtcgccgaa gcaccaggat       120
     atcggtttaa gaagagattg aatagacaag aaaagaagag gttatcggaa acaatcattg       180
     aaggaatacg ttcacaaatg gcctctgagg gtgtttatga ttatcctgag gtaacacagg       240
     cgacgttgta cttatttgga gatcctggtc aaccagccaa aaaggttatc cttacaccac       300
     acaacccatt ggctgtctca caaggtagtg gtaatcccgt tggtttcccg agcaaccgtg       360
     gcgagctaag acaaactgga cctgcgatgg agatgacaga agaggaaaaa caacaggcgt       420
     taactagtga gactattgtg atgcacgctc aagcacgaat cgacatatcg cacgtagaga       480
     aaaacgttgg gctcatttca gatggatctt acacttcaca atgttttatc acgcagagtt       540
     ggtgtgttgc tccttatcat ttggcaagtt atttcaagca aactagcaac actttaacta       600
     tcacaacgtc ctctggtcat tacacgttgc cccgaccctt agtgcacaag atactaaatc       660
     atgatctagt tattttcaaa atgcctggtg actttccacc aatgaaaaag atatcatgtt       720
     taaggaaacc aaacccagat gacgagattg ttttgataac aaccaagagg acgccatctg       780
     gtttgaggac cacattttca tcatcattct acataagtga acaccattca ggaatgatgc       840
     agtatgcgct taaatcagtg ccaggctttt gtggaggacc aatcatgtca atcaaggatg       900
     gacaaattat agggtttcat tcggccgctc gagttgtaaa catgcaggat cgaggctcaa       960
     ctttcacgtg tgtgaatgag gaagtgattg aggtactaca atcggaaagt tcacaaacgc      1020
     tcataccatg gctctttaac gaagagatgg ttcagtggaa aggagttaat tcaaacctcg      1080
     acccaagaaa cttcccaatt gctaagacac acacagagct agtattccat ggggctgaag      1140
     tacaacacgg aactgataag tactttggtg acaatctaac aatacaagga aggataaatc      1200
     aatcattcaa caataggcat gtcatcaaag gatcagacac gtacttcgat gagtttgtca      1260
     tgcatgtgag accagcacct gagcgagttg atgcgcattt acctagtgat ttgagtgtgg      1320
     aggctttctt caaagatttc cttaagtatg ccacacctgt tgagctaggt cgggtggatt      1380
     tggaatgttt ggcaagtgcg gtggataagg tgatcagcca tctcgaaaac caaggatttg      1440
     ctgcaaaaga atttcaagtt gaaacgaact tttatacatt actgaattcg atgaacttgg      1500
     atacagccat gggtgcgttg taccaaacaa agaagcgcga tgtgctcatg ccagcaacac      1560
     acgaagagtt gagcacttg                                                   1579
//