ID   JQ954725; SV 1; linear; genomic RNA; STD; VRL; 1579 BP.
XX
AC   JQ954725;
XX
DT   08-OCT-2012 (Rel. 114, Created)
DT   08-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Sugarcane streak mosaic virus isolate M86 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Poacevirus.
XX
RN   [1]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   "Genetic variability and population structure of Sugarcane streak mosaic
RT   virus (SCSMV)";
RL   Unpublished.
XX
RN   [2]
RP   1-1579
RA   He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.;
RT   ;
RL   Submitted (19-APR-2012) to the INSDC.
RL   State Key Laboratory for Biology of Plant Diseases and Insect Pests,
RL   Institute of Plant Protection, Chinese Academy of Agricultural Sciences,
RL   West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China
XX
DR   MD5; 0db893ab651bb0d62b6c4159c2a0108a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1579
FT                   /organism="Sugarcane streak mosaic virus"
FT                   /host="sugarcane"
FT                   /isolate="M86"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Wenfeng Li and Zhen He"
FT                   /collection_date="20-Aug-2010"
FT                   /db_xref="taxon:53954"
FT   CDS             <1..>1579
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="contains NIa-Pro protein and NIb protein"
FT                   /db_xref="GOA:K0IIC7"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="UniProtKB/TrEMBL:K0IIC7"
FT                   /protein_id="AFU50417.1"
FT                   /translation="WDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYVVAEAPGYRFKKR
FT                   LNRQEKKRLSETIIEGIRSQMASEGVYDYPEVTQATLYLFGDPGQPAKKVILTPHNPLA
FT                   VSQGSGNPVGFPSNRGELRQTGPAMEMTEEEKQQALASETIVMHAQARIDISHVEKNVG
FT                   LISDGSYTSQCFITQSWCVAPYHLASYFKQTSNTLTITTSSGHYTLPRPLVHKILNHDL
FT                   VIFKMPGDFPPMKKISCLRKPNPDDEIVLITTKRTPSGLRTTFSSSFYISEHRSGMMQY
FT                   ALKSVPGFCGGPVMSIKDGQIIGFHSAARVVNMQDRGSTFTCVNEEVIEVLQSESSQTL
FT                   IPWLFNEEMVQWKGVNSNLDPRNFPIAKTHTELVFHGAEVQHGTDKYFGDNLTIQGRIN
FT                   QSFNNRHVIKGSDTYFDEFVMHVRPAPERVDAHLPSDLSVEAFFKDFLKYATPVELGRV
FT                   DLECLASAVDKVISHLEDQGFAAKEFQVETNFYTLLNSMNLDTAMGALYQTKKRDVLVP
FT                   ATHEELST"
XX
SQ   Sequence 1579 BP; 499 A; 314 C; 368 G; 398 T; 0 other;
     attgggatga tggaaaacag cagtgggatt cgcgtgaggg gacatatacg aatgttttca        60
     aaacactata tgatttggac ccaacgaaat ttaagtatgt tgtcgctgaa gcaccaggat       120
     accggtttaa gaagagattg aacagacaag aaaagaagag gttatcggaa acaatcattg       180
     aagggatacg ttcacaaatg gcctctgagg gtgtttatga ttatcctgag gtgacacagg       240
     cgacgttgta cttatttgga gatcctggtc aaccagccaa aaaggttatc cttacaccac       300
     acaatccatt ggctgtctca caaggtagtg gaaatcccgt tggttttccg agcaaccgtg       360
     gcgagctaag acaaactgga cctgcgatgg agatgacaga agaagaaaaa caacaggcgt       420
     tggctagtga gactattgtg atgcatgctc aagcacgaat cgacatatcg cacgtagaga       480
     aaaacgttgg gctcatctcg gatggatctt acacttcaca atgttttatt acgcagagtt       540
     ggtgtgttgc tccttatcat ctggcaagtt atttcaagca aactagcaac actttaacta       600
     tcacaacgtc ctctggccat tacacgttgc cccgaccatt agtgcataag atactaaatc       660
     atgacctagt tattttcaaa atgcctggtg actttccacc aatgaaaaag atatcgtgtt       720
     tgaggaaacc aaacccagat gacgagattg ttttgataac aaccaagagg acgccatctg       780
     gtttgagaac cacattttca tcatcattct acataagtga acaccgttca ggaatgatgc       840
     agtatgcgct caaatcagta ccaggctttt gtggaggacc agtcatgtca atcaaggatg       900
     gacaaattat agggtttcat tcagccgctc gagttgtaaa catgcaggat cgaggctcaa       960
     ctttcacgtg tgtgaatgag gaagtaatcg aggtgctaca atcggaaagt tcacaaacgc      1020
     tcataccatg gctctttaac gaggaaatgg ttcagtggaa aggagtcaat tcaaacctcg      1080
     acccaagaaa cttcccaatt gcaaagacac acacagagct agtattccat ggagctgaag      1140
     tacaacacgg aactgataag tactttggtg ataatctaac aatacaggga aggataaatc      1200
     aatcattcaa caataggcat gtcatcaaag gatcagacac gtacttcgat gagtttgtca      1260
     tgcatgtgag accagcacct gagcgagttg atgcgcattt acctagtgat ctgagtgtgg      1320
     aggctttctt taaggatttc cttaaatatg ccacacctgt tgagctaggt cgggtggatt      1380
     tggaatgttt ggcaagtgcg gtggataagg tgatcagcca tctcgaagac caaggatttg      1440
     ctgcaaaaga atttcaagtt gaaacaaact tttacacatt actgaattcg atgaacttgg      1500
     atacagctat gggtgcgttg taccaaacaa agaagcgcga tgtactcgta ccagcaacac      1560
     acgaagagtt gagcacttg                                                   1579
//