ID JQ948090; SV 1; circular; genomic DNA; STD; VRL; 2791 BP. XX AC JQ948090; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Digitaria ciliaris striate mosaic virus isolate AU-QG7-2011, complete DE genome. XX KW . XX OS Digitaria ciliaris striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2791 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2791 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; e8e969ea50dd2e163aa834195911ff0f. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2791 FT /organism="Digitaria ciliaris striate mosaic virus" FT /host="Digitaria ciliaris" FT /isolate="AU-QG7-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.55 S 152.98 E" FT /collection_date="2011" FT /note="genotype: DCSMV-A" FT /db_xref="taxon:1196237" FT CDS 1..342 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FGE1" FT /db_xref="UniProtKB/TrEMBL:J7FGE1" FT /protein_id="AFN80567.1" FT /translation="MAEYPQSAFVGGSAILRQGPVDSFASTLKVTALGLFATFIGAAVL FT SFLYRTCLSDCITQYRLGSWSSTVNSGFGGNRALPQVVRGDLERQVSVPVRDSGVLPVV FT SGAAAVGGG" FT CDS 349..1071 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FGE2" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FGE2" FT /protein_id="AFN80568.1" FT /translation="MPASSKRKRGSSSAGKRRKKPRYTKWTGSRSSASQDALQVQTFQY FT AEDQAFNAGGRALLLTAFTRGSAENQRKSQETITYKVSVSLGVSASSTVQKYCVKSQPI FT CWLVYDKTPTGIADLVPSDIFDVPSGLTNWPSTWKVKREVSHRFVVKRRWPFTLSCNGS FT TFTADYTKLPVPNTDNLVSVNRFAKGLGVRTEWKDTVSAEASDIKGGALYIVLAPANGV FT VFTARGVIKVYFKSVGNQ" FT CDS complement(join(1275..1691,1775..2452)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FFY5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FFY5" FT /protein_id="AFN80570.1" FT /translation="MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCL FT LDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEY FT HPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKS FT KEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRA FT ELYTQGRNPAERRKSLYICGPIRTGKTTWARSLGKHNYWQHSVDFLNIIPDAEYNVIDD FT IPFKFVPCWKGLVGAQRDITVNPKYGKKRLLSNGVPCIILANEDEDWLQQMQPGQADWF FT NANCEVHYMYQGETFFKSLGAATA" FT CDS complement(1535..2452) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FGV7" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FGV7" FT /protein_id="AFN80569.1" FT /translation="MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCL FT LDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEY FT HPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKS FT KEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRA FT ELYTVSPYAYSIHSGLSEEQARADLQWMHDTSRAETLLNEENPSTSADQFVPERPPGPE FT VWASITTGNTASTSSTSFPTLNTM" XX SQ Sequence 2791 BP; 561 A; 677 C; 817 G; 736 T; 0 other; atggcggagt accctcagtc agcctttgtt ggaggtagtg cgattttgcg tcaaggcccg 60 gtcgatagct ttgcttcgac gttgaaggta actgctttgg ggctctttgc tacgttcatt 120 ggggccgcag tcctgtcatt tttgtacagg acgtgtctat cagactgcat tacgcagtac 180 cggcttggtt cctggagcag taccgtcaat tcgggctttg ggggtaaccg ggcgttaccc 240 caggtcgtac gtggagacct agaaagacaa gtatctgtcc ccgttaggga ctctggtgtt 300 ttgcctgtgg tttcaggagc tgctgcagtt ggcggaggct gagtcgtcat gcctgcttcg 360 tcgaagagga agcgtgggag cagttctgct gggaagcggc gtaagaagcc gcggtacacg 420 aagtggactg gttcccgttc cagcgctagc caggatgcac tgcaggtgca gaccttccaa 480 tatgctgagg atcaggcatt taatgcagga ggacgtgcgc tgttgctcac ggcatttacc 540 cgcggttctg cagagaacca gcggaagtcc caggagacca ttacgtacaa ggttagtgtt 600 agccttggcg tttcggcatc ttctactgta cagaagtact gcgtgaagag ccagccgata 660 tgctggctcg tgtacgataa gacgcctact gggattgctg accttgtccc ctcggacatt 720 ttcgatgtgc cgagtggatt gaccaattgg ccttctacct ggaaggtcaa gcgagaagtc 780 tcgcaccgct ttgtggtgaa acggcgctgg ccgtttacgt tgagttgcaa cgggagtacc 840 ttcacggcgg attacacgaa gctgccggtg cccaatacag acaacctggt gtccgtgaac 900 cggttcgcca agggattagg agtgcggacc gagtggaagg atacggtgtc tgcggaggcc 960 tccgacatta agggtggagc cctttacata gttcttgccc cggctaacgg ggttgttttc 1020 accgcccgcg gggtaattaa ggtgtacttt aagtctgtgg gcaaccagta gcccagtgta 1080 atgagcccct tgggcgagta ttaataaaac tccagtttta ttattgcact tgtgcagtgg 1140 cggtacgaca cagaaaatac aacattaacc taaattggcg gccagatcga aggcggctaa 1200 gggttaggac tcgaaaaaaa aaaacacacc caactcatat taatgaaaat gcgcggcgcg 1260 tgccgacgga ggagtcacgc tgtagctgcg ccaaggcttt tgaagaaagt ctctccttgg 1320 tacatgtaat gtacctcgca gttagcgtta aaccagtcag cctgaccagg ctgcatttgt 1380 tggagccagt cttcgtcctc gttggcgagg attatgcatg ggactccgtt ggagagcagc 1440 cgttttttgc cgtactttgg attgacggtg atgtccctct gtgctccgac caaccccttc 1500 caacaaggga cgaatttgaa ggggatgtca tcaattacat tgtattcagc gtcgggaatg 1560 atgttgagga agtcgacgct gtgttgccag tagttatgct tgcccagact tctggcccag 1620 gtggtctttc cggtacgaat tggtccgcag atgtagaggg attttcttcg ttcagcaggg 1680 tttctgccct gctggtgtca tgcatccatt ggaggtcagc tctagcttgt tcctccgaaa 1740 gaccggagtg aatgctgtaa gcatagggac ttacagtgta cagttctgct cggagccatg 1800 ctccgagcac tggatgttct tcttggcttg gcatgttgaa tgggctgacg tagggcggag 1860 gagtagaggg gaacagccgt tcggctgagt attcaaagtt ttgcaacctt gttgcccagt 1920 cgaatgggaa ggtcttcctt accattgaga gatactcctc cttgctcttg gagcttctga 1980 tgatatccgc cattttggcg tcctttgttg ttgacgcgtc gatcttgcgt ttgcggacgt 2040 cgctctccgt gtacgccccc tcctcggcgt acgataccgg agatttcttg cagtatgcaa 2100 ggactttgtg gggcatcctt gcgttttgta cgttgggatg gtattcttcg aggtcgaaga 2160 agcgtgcacg cgtagtgcgt acgtgtttct tgcattgcac gaagcaatgc aggtggaagg 2220 tgccgtcttg gtgtagttct cttgccacgt atacatacgt aggctcaaac ttgcgaagtt 2280 tgtgcgtgat gtcacgcaac gcttcctgtg gatcaagcaa gcacttgctg tatgttagga 2340 agatgttctt ggccctcacc tcgaagcttg cttcggcagc gcccggagcg cgttcggcca 2400 gtcggcagtt tgccgagttt gccgactctg tgtcactgac aggaggagcc atctcgtcag 2460 aagctaacgt ggatagcttc ttagcccttg gatcagcttt gagatccgag gttttgagaa 2520 actctcttcc tagacctcgc ccagttgccg agttgcccgc tccttgacgg gcctttaaat 2580 aggccggagc ggggattgct ttgttacttt gggccctagg taaagatggg cgagcataat 2640 attaccgccc atctttaccc gaggggccta cgctcagcag gccccgaggc tttggcgccc 2700 actagggttt gcgcccgcct gacgtattga ggtttgcccg ccgctttaat ttgagtgccg 2760 tctttataag acgggacctc gccgcccttc t 2791 //