ID JQ948088; SV 1; circular; genomic DNA; STD; VRL; 2816 BP. XX AC JQ948088; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Digitaria ciliaris striate mosaic virus isolate AU-QG5-2011, complete DE genome. XX KW . XX OS Digitaria ciliaris striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2816 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2816 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; c1da16d2b27e198210512f0f97c51eb8. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2816 FT /organism="Digitaria ciliaris striate mosaic virus" FT /host="Digitaria ciliaris" FT /isolate="AU-QG5-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.55 S 152.98 E" FT /collection_date="2011" FT /note="genotype: DCSMV-B" FT /db_xref="taxon:1196237" FT CDS 1..345 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FGV5" FT /db_xref="UniProtKB/TrEMBL:J7FGV5" FT /protein_id="AFN80559.1" FT /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIADFITQFRLSGLSSSTFNSGFGRTGEVPPAVPTRPECEVSIPVRESGVLLV FT LSGAASVGGG" FT CDS 352..1074 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FFY1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FFY1" FT /protein_id="AFN80560.1" FT /translation="MPASSKRKRGSSSAGKRRKKPRYTKWTGSRSSASQDALQVQTFQY FT AEDQAFNAGGRALLLTAFTRGSAENQRKSQETITYKVSVSLGVSASSTVQKYCVKSQPI FT CWLVYDKTPTGIADLVPSDIFDVPSGLTNWPCTWKVKREVSHRFVVKRRWPFTLSCNGS FT TFTADYTKLPVPNTDNLVSVNRFAKGLGVRTEWKDTVSAEASDIKGGALYIVLAPANGV FT VFTARGVIKVYFKSVGNQ" FT CDS complement(join(1278..1694,1778..2455)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FGE0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FGE0" FT /protein_id="AFN80562.1" FT /translation="MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCL FT LDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEY FT HPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKS FT KEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRA FT ELYTQGRNPAERRKSLYICGPTRTGKTSWARSLGKHNYWQHSVDFLNIIPDAEYNVIDD FT IPFKFVPCWKGLVGAQRDITVNPKYGKKRLLSNGVPCIILANEDEDWLQQMQPGQADWF FT NANCEVHYMYQGETFFKSLGAATA" FT CDS complement(1538..2455) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FH83" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FH83" FT /protein_id="AFN80561.1" FT /translation="MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCL FT LDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEY FT HPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKS FT KEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRA FT ELYTVSPYAYSIHSGLSEEQARADLQWMHDTSRAETLLNEENPSTSADQLVPVRHLGPE FT VWASITTGNTASTSSTSFPTLNTM" XX SQ Sequence 2816 BP; 571 A; 685 C; 803 G; 757 T; 0 other; atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt 120 gctgcgtgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc 180 cgtttatccg gtttaagcag tagtaccttc aattcgggct ttgggcggac cggtgaggtt 240 ccgccagctg tccctacaag gccagaatgt gaagtttcta tccccgtaag ggaatctggt 300 gttttgctcg tgctttcagg agctgcttcc gtgggtggag gttgagtcgt catgcctgct 360 tcgtcgaaga ggaagcgcgg gagcagttct gctgggaagc ggcgtaagaa gccgcggtac 420 acgaagtgga ctggttcccg ttccagcgct agccaggatg cactgcaggt gcagaccttc 480 caatatgctg aggatcaggc atttaatgca ggaggacgtg cgctgttgct cacggcattt 540 acccgcggtt ctgcagagaa ccagcggaag tcccaggaga ccattacgta caaggttagt 600 gttagccttg gcgtttcggc atcttctact gtacagaagt actgcgtgaa gagccagccg 660 atatgctggc tcgtgtacga taagacgcct actgggattg ctgaccttgt cccctcggac 720 attttcgatg tgccgagtgg attgaccaat tggccttgta cctggaaggt caagcgagaa 780 gtctcgcacc gctttgtggt gaaacggcgc tggccgttta cgttgagttg caacgggagt 840 accttcacgg cggattacac gaagctgccg gtgcccaata cagacaacct ggtgtccgtg 900 aaccggttcg ccaagggatt aggagtgcgg accgagtgga aggatacggt gtctgcggag 960 gcctccgaca ttaagggtgg agccctttac atagttcttg ccccggctaa cggggttgtt 1020 ttcaccgccc gcggggtaat taaggtgtac tttaagtctg tgggcaacca gtagcccagt 1080 gtaatgagcc ccttgggcga gtattaataa aactccagtt ttattattgc acttgtgcag 1140 tggcggtacg acacagaaaa tacaacatta acctaaattg gcggccagat cgaaggcggc 1200 taagggttag gactcgaaaa aaaaaaacac acccaactca tattaatgaa aatgcgcggc 1260 gcgtgccgac ggaggagtca cgctgtagct gcgccaaggc ttttgaagaa agtctctcct 1320 tggtacatgt aatgtacctc gcagttagcg ttaaaccagt cagcctgacc aggctgcatt 1380 tgttggagcc agtcttcgtc ctcgttggcg aggattatgc atgggactcc gttggagagc 1440 agccgttttt tgccgtactt tggattgacg gtgatgtccc tctgtgctcc gaccaacccc 1500 ttccaacaag ggacgaattt gaaggggatg tcatcaatta cattgtattc agcgtcggga 1560 atgatgttga ggaagtcgac gctgtgttgc cagtagttat gcttgcccag acttctggcc 1620 caagatgtct taccggtacg agttggtccg cagatgtaga gggattttct tcgttcagca 1680 gggtttctgc cctgctggtg tcatgcatcc attggaggtc agctctagct tgttcctccg 1740 aaagaccgga gtgaatgctg taagcatagg gacttacagt gtacagttct gctcggagcc 1800 atgctccgag cactggatgt tcttcttggc ttggcatgtt gaatgggctg acgtagggcg 1860 gaggagtaga ggggaacagc cgttcggctg agtattcaaa gttttgcaac cttgttgccc 1920 agtcgaatgg gaaggtcttc cttaccattg agagatactc ctccttgctc ttggagcttc 1980 tgatgatatc cgccattttg gcgtcctttg ttgttgacgc gtcgatcttg cgtttgcgga 2040 cgtcgctctc cgtgtacgcc ccctcctcgg cgtacgatac cggagatttc ttgcagtatg 2100 caaggacttt gtggggcatc cttgcgtttt gtacgttggg atggtattct tcgaggtcga 2160 agaagcgtgc acgcgtagtg cgtacgtgtt tcttgcattg cacgaagcaa tgcaggtgga 2220 aggtgccgtc ttggtgtagt tctcttgcca cgtatacata cgtaggctca aacttgcgaa 2280 gtttgtgcgt gatgtcacgc aacgcttcct gtggatcaag caagcacttg ctgtatgtta 2340 ggaagatgtt cttggccctc acctcgaagc ttgcttcggc agcgcccgga gcgcgttcgg 2400 ccagtcggca gtttgccgag tttgccgact ctgtgtcact gacaggagga gccatctcgt 2460 cagaagctaa cgtggatagc ttcttagccc ttggatcagc tttgagatcc gaggttttga 2520 gaaactctct tcctagaccg ctgccgactg ccgagttctc cccccgatag cccttcttat 2580 agggccgggg ggcattggtt tccgtgtggg ccggcccggt aaagaggcag cgcaataata 2640 ttaccgctgc cctctttacc cgagggcccc atgctcaacg gggaccgagg tgctttcatg 2700 ccgggcccta tcagcccact aagggctgtt tcccgcaatc tgatatcgat tttttgcttt 2760 gactgacatt tctgctttgg atgcggcttt aaatagacgc atcgcacttc ttcgcc 2816 //