ID JQ948087; SV 1; circular; genomic DNA; STD; VRL; 2806 BP. XX AC JQ948087; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum dilatatum striate mosaic virus isolate AU-QG46-2011, complete DE genome. XX KW . XX OS Paspalum dilatatum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2806 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2806 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; db80a9f9f07dcb7d89f772391456ba01. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2806 FT /organism="Paspalum dilatatum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-QG46-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="26.81 S 152.96 E" FT /collection_date="2011" FT /note="genotype: PDSMV-A1" FT /db_xref="taxon:1196236" FT CDS 1..342 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FHL8" FT /db_xref="UniProtKB/TrEMBL:J7FHL8" FT /protein_id="AFN80663.1" FT /translation="MAEYPQSALVVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIAEFITQYRLSGLSSLTSSGFGRTVEDPPAVPRTASEVSIPVAVRGGIPPVI FT SGASGIPGN" FT CDS 351..1070 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FHL5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FHL5" FT /protein_id="AFN80664.1" FT /translation="MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWS FT EDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVALNLGVSASATVLKYCCSSQPIC FT WLVYDKTPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGST FT FQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAESSDIKGGALYLVIAPANGLV FT FTARGVIKCYFKSVGNQ" FT CDS complement(join(1278..1682,1766..2461)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FHB3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FHB3" FT /protein_id="AFN80666.1" FT /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT FT YSRCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF FT DVEEFHPNVQNARVPHKVLAYIRKGPVCFVEHGAFKDEAKEKKKKADAPSTKDAKMASI FT ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL FT GAWLREELYSQDRSPAERRRSLYICGPTRTGKTTWARSLGCHNYWQHSVDFLHVIPTAR FT YNIIDDIPFKFVPCWKGLVGAQREITVNPKYGKKRLLPNGIPCIILVNEDEDWPQQMQP FT SQAAWFEDNCVVFYMNQGFRFFETTA" FT CDS complement(1523..2461) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FG38" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FG38" FT /protein_id="AFN80665.1" FT /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT FT YSRCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF FT DVEEFHPNVQNARVPHKVLAYIRKGPVCFVEHGAFKDEAKEKKKKADAPSTKDAKMASI FT ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL FT GAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISKLSRTEVLLNGEEASTSADQLVPE FT RPLGQEVLDVTTTGSIPWTSSTSFPLPDTTS" XX SQ Sequence 2806 BP; 639 A; 720 C; 737 G; 710 T; 0 other; atggcggagt accctcagtc tgctttagtg gtaagtggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttatttgc agcatttatt 120 gctgcttgcg tcttgtcatt catttacaag acgtgcattg cggaattcat tacgcaatac 180 cgtttatccg gtttaagcag tttaacttca tctggctttg ggcggaccgt tgaggatccg 240 ccagctgtcc cccggacagc gtctgaggtt tcaattccag ttgctgttag aggtggtatt 300 cctcctgtga tttcaggtgc ttccggaatt cccggaaatt gacgttggaa atgccgtctt 360 cctcgaagag gaagaggggg agtacctctg gtactaagcg gcgtaagaag ccgcgaacca 420 cgaagtggac tggatcccgc agcgcatcta gagaggcgct gcaagtacag accttcacct 480 ggagtgaaga ccaggcgttc aacgccggtg gccgagcgat ccttctctcg gcctatacgc 540 gcggttctgg cgagaaccag cgcaaatccc aggaaaccat tacgtacaag gttgctctca 600 accttggagt atccgcatcc gctacggttc tcaaatattg ttgcagcagc cagccgatat 660 gctggctggt gtatgacaag acgcctactg ggattactga cctgaccccg tcagacatct 720 tcgatgtgcc ctcggggtta cagaactggc cttcgacctg gaaggtcaaa cgcgaagcgt 780 ctcaccgctt tgtggtgaaa cggcgttggc cgtttaagtt ggaatgtaac ggcagtacgt 840 tccagaaaga ctacacgaac ctgcctgtct gcaatacgca gaacctggtg tctgtaacga 900 ggttcgccaa gggacttgga gtgcgaacgg agtggaagga cacaacgacg gcggagtcgt 960 cggacatcaa gggcggagcc ctgtaccttg tgatagctcc tgctaacggg cttgtgttca 1020 cagcccgtgg tgtaatcaag tgctacttta agtctgtggg taatcagtag cccactgtaa 1080 ttgagcccat tgggcgatct atgatctgaa ataaaatggc acattttatt tatcgcattg 1140 cgatgaacgc gtagcgttac aaattacaat acatagcgca gcctcgggct aaagaccgag 1200 tctgaagcga ccctagtaca ataccaccgg aaaaacaata tctatctgat aatgcctcgc 1260 gcgtaggtgt gtaacaccta cgccgtcgtt tcgaagaaac ggaacccttg gttcatgtag 1320 aagactacgc agttgtcttc aaaccatgca gcctgtgatg gctgcatttg ttgtggccag 1380 tcttcatcct cgttcacgag gattatgcaa ggtattccgt taggaagaag acgtttcttc 1440 ccgtactttg gattcacggt gatttccctc tgtgccccaa caagcccctt ccaacaagga 1500 acgaacttga acgggatgtc atctatgatg ttgtatctgg cagtgggaat gacgtggagg 1560 aagtccacgg aatgctgcca gtagttgtga catccaagac ttcttgccca agtggtcttt 1620 ccggtacgag ttggtccgca gatgtagagg cttcttcgcc gttcagcagg acttctgtcc 1680 tgctcaattt agaaatccat tggaggtcaa gcttggcttg atcctccgtg actccgttgt 1740 gaatggaata tgcatatgga cttactgaat ataattcttc tcggagccat gctccgagca 1800 cctgatgttc tgcctgtgaa ggcatcccga agggatcaac atacggagga gggaggcagg 1860 ggaacagcgc ttgcgctgag tattcgaact gttgcaaccg tgttgcccag tcgaatggaa 1920 attccttttt gaccatccca agatagtcct cacgtgatgt tgattgagaa attatagacg 1980 ccattttggc gtccttcgtg gaaggagcgt cagccttctt cttcttctct ttcgcttcgt 2040 ccttgaaagc cccgtgctca acgaagcata cggggccttt cctgatgtac gcaagtacct 2100 tgtgaggtac ccgcgcgttc tgcacgttag gatgaaattc ttcgacatcg aagaatttag 2160 cactcttagt gcgaatgtat tttctgcact gtactagaca gtgcaaatgg taagagccat 2220 ccttgtgctc ttcccttgcg acgtatgaat acgtcgggtc ccacttctta agaagtctgg 2280 agaggcgttc aagcatgaac gacggctcca ggtggcacct actgtatgtc aggaagacat 2340 tcctgcttct tacctcgaag caagcttcga ccgcccctgg ggcgccaact tcctccccct 2400 gaaggggggg ggcgccaact tgccccctgg cgccctctgt ctcactgaca tgtgaggcca 2460 tcttggaaga agctatcgtg gatagcttca cagccgtagg atgtgctttg agatccgagg 2520 ttttgaaaaa ctctctggac aaccgtcgcc ccttgccccc ttccgctgct gaagggcctg 2580 ttaaataggc cgcagcggag atggctttaa tttgggccgg cccccccgga aagtagggcg 2640 acgagataat attaccgtcg ccctgctttg cgagggccca tgctcaacgg gcccgagcgg 2700 tcccggccca tccactaagg attgctcccc gcaatacgat aaatggattt gactgccgct 2760 ttactttaaa cgacgtctat aaaagaccgc atcgcactac gacgcc 2806 //