ID   JQ948085; SV 1; circular; genomic DNA; STD; VRL; 2806 BP.
XX
AC   JQ948085;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum dilatatum striate mosaic virus isolate AU-QG44-2011, complete
DE   genome.
XX
KW   .
XX
OS   Paspalum dilatatum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2806
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2806
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 1eebb892e534976e77c1275cf20c839f.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2806
FT                   /organism="Paspalum dilatatum striate mosaic virus"
FT                   /host="Digitaria ciliaris"
FT                   /isolate="AU-QG44-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="26.57 S 153.03 E"
FT                   /collection_date="2011"
FT                   /note="genotype: PDSMV-A3"
FT                   /db_xref="taxon:1196236"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FG31"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG31"
FT                   /protein_id="AFN80655.1"
FT                   /translation="MAEYPQSALVVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL
FT                   SFIYKTCIAEFITQYRLSGLSSVTSSGFGRTVEDPPAVPRTASEVSIPVAVRSGIPPVI
FT                   SGPSGIPGN"
FT   CDS             351..1070
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FHB1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHB1"
FT                   /protein_id="AFN80656.1"
FT                   /translation="MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWS
FT                   EDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVAINLGVSASATVLKYCCSSQPIC
FT                   WLVYDKTPTGITDLTPSDVFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGST
FT                   FQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVIAPANGLV
FT                   FTARGVIKCYFKSVGNQ"
FT   CDS             complement(join(1278..1682,1766..2461))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHL7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHL7"
FT                   /protein_id="AFN80658.1"
FT                   /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT
FT                   YSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT                   DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKKKADALSTKDAKMASI
FT                   ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT                   GAWLREELYSQDRSPAERRRSLYICGPTRTGKTSWARSLGCHNYWQHSVDFLHVIHTAR
FT                   YNVIDDIPFKFVPCWKGLVGAQRDITVNPKYGKKRVLPNGIPCIILVNEDEDWPQYMQP
FT                   SQAAWFEDNCIVFYMNQGFRFFETTA"
FT   CDS             complement(1523..2461)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGH1"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGH1"
FT                   /protein_id="AFN80657.1"
FT                   /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT
FT                   YSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT                   DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKKKADALSTKDAKMASI
FT                   ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT                   GAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISELSRTEVLLNGEEASTSADQQELE
FT                   RPPGQEVLDVITTGSIPWTSSTSFTLPDTTS"
XX
SQ   Sequence 2806 BP; 633 A; 718 C; 737 G; 718 T; 0 other;
     atggcggagt accctcagtc tgctttagtg gtaagtggtg cgattccacg gcgaagccag        60
     gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttatttgc agcatttatt       120
     gctgcttgcg tcttgtcatt catttacaag acgtgcattg cggaattcat tacgcaatac       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgt tgaggatccg       240
     ccagctgtcc cccggacagc gtctgaggtt tcaattccag ttgctgttag aagtggtatt       300
     cctcctgtga tttcaggtcc ttccggaatt cccggaaatt gacgttggag atgccgtctt       360
     cctcaaagag gaagaggggg agtacctctg gtactaagcg gcgtaagaag ccgcgaacca       420
     cgaagtggac tggatcccgc agcgcatcta gagaggcgct gcaagtacag accttcacct       480
     ggagtgaaga ccaggcgttc aacgccggtg gccgagcgat ccttctctcg gcctatacgc       540
     gcggttctgg cgagaaccag cgcaaatccc aggaaaccat tacgtacaag gttgccatca       600
     accttggtgt ttccgcttcc gctacggtac tcaagtactg ctgcagcagc cagccgatat       660
     gctggctggt gtatgacaag acgcctactg ggattactga cctgaccccg tcagacgttt       720
     tcgatgtgcc ctcgggttta cagaactggc cttcgacctg gaaggtcaaa cgcgaagcgt       780
     ctcaccgctt tgtggtgaaa cggcgttggc cgtttaagtt ggaatgtaac ggcagtacgt       840
     tccagaagga ctacacgaac ctgcctgtct gcaatacgca gaacctggtg tctgtaacga       900
     ggttcgccaa gggacttggg gtgcgaacgg agtggaagga cacaacgacg gcggaggcgt       960
     cggacatcaa gggcggagcc ctgtaccttg tgatagctcc tgctaacggg cttgtgttca      1020
     cagcccgtgg tgtaatcaag tgctacttta agtctgtggg taatcagtag cccactgtaa      1080
     ttgagcccat tgggcgatct atgatctgaa ataaaatggc acattttatt tatcgcattg      1140
     cgatgaacgc gtagcgttac aaattacaat acatagcgca gcctcgggct aaagaccgag      1200
     tctgaagcga ccctagtaca ataccaccgg aaaaacaata tctatctgat aatgcctcgc      1260
     gcgtaggtgt gtaacaccta cgccgtcgtt tcgaagaaac ggaacccttg gttcatgtag      1320
     aagacgatgc agttgtcttc aaaccatgca gcctgtgatg gctgcatgta ttggggccag      1380
     tcctcatcct cgttgacgag gattatgcaa ggtattccgt taggaagaac acgttttttc      1440
     ccgtactttg gattgacggt gatgtccctc tgcgccccaa caagcccctt ccaacaagga      1500
     acaaacttga aagggatgtc atctatgacg ttgtatctgg cagtgtgaat gacgtggagg      1560
     aagtccacgg aatgctgcca gtagttatga catccaagac ttcttgccca ggaggtcttt      1620
     ccagttcttg ttggtccgca gatgtagagg cttcttcgcc gttcagcagg acttctgtcc      1680
     tgctcaattc agatatccat tggaggtcaa gcttggcttg atcctccgtg actccgttgt      1740
     gaatggaata tgcatatgga cttacagagt ataattcttc tcggagccat gctccgagca      1800
     cctgatgttc tgcctgtgaa ggcatcccga agggatcaac atacggagga gggaggcagg      1860
     ggaacagcgc ttgcgctgag tattcgaact gttgcaacct tgttgcccag tcgaatggaa      1920
     attctttttt gaccatccca agatagtcct cacgtgatgt tgattgagaa attatagacg      1980
     ccattttggc gtccttcgtg gaaagtgcgt cagccttctt cttcttcttc ttcgcttcgt      2040
     ccttgaaagc cccgtgctca acgaagcata cggggccttt cttgatgtac gcaagtactt      2100
     tgtgaggtac ccgcgcgttc tgcacgttag gatgaaattc ttcgacatcg aagaatttag      2160
     cactcttagt gcgaatgtat tttctgcact gtactagaca gtgcaaatgg taagagccat      2220
     ccttgtgctc ttcccttgcg acgtatgtat acgtcgggtc ccacttcttc agaagtctgg      2280
     agaggcgttc aagcatgtac gccggctcca ggtggcactt actgtatgtc aggaagacat      2340
     tcctgcttct tacctcgaag caagcttcga ccgcccctgg ggcgccaact tcctccccct      2400
     gaaggggggg ggcgccaact tgccccctgg cgccctctgt ctcactgaca tgtgaggcca      2460
     tcttggaaga agctatcgtg gatagcttca cagccgtagg atgtgctttg agatccgagg      2520
     ttttgaaaaa ctctcttgac aaccgtcgcc ccttgccccc ttccgctgct gaagggcctg      2580
     ttaaataggc cgcagcggag atggctttaa tttgggccgg cccacccgga aagtagggcg      2640
     acgagataat attaccgtcg ccctgctttg cgagggccca tgctcaacgg gcccgagcgg      2700
     tcccggccca tccactaagg attgctcccc gcattccgat aaatggattt tactgccact      2760
     ttactttgaa cgatgtctat aaaagacagc atcgcactac gacgcc                     2806
//