ID   JQ948080; SV 1; circular; genomic DNA; STD; VRL; 2818 BP.
XX
AC   JQ948080;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum striate mosaic virus isolate AU-QG3-2011, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2818
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2818
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 142593b685430ee1c69dd5e533652631.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2818
FT                   /organism="Paspalum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-QG3-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.55 S 152.98 E"
FT                   /collection_date="2011"
FT                   /note="genotype: PSMV-A6"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..336
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FG19"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG19"
FT                   /protein_id="AFN80639.1"
FT                   /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL
FT                   SFIYKTCIADFITQFRLSGLSSVTSSGFGRTGEVPPAVPTRTASEVSIPVREAVSAPPL
FT                   VSSVVGV"
FT   CDS             342..1061
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FGW0"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGW0"
FT                   /protein_id="AFN80640.1"
FT                   /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG
FT                   EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV
FT                   FTARGVIKVYFKSVGNQ"
FT   CDS             complement(join(1277..1675,1762..2457))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHA8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHA8"
FT                   /protein_id="AFN80641.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIVQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTDRSPAERRRSLYICGPIRTGETSWARSLGSHNYWQHSVDFLHVIQNAKY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS
FT                   QAEWFNANAVVHYMYEGESFFEAL"
FT   CDS             complement(1546..2457)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGG5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGG5"
FT                   /protein_id="AFN80642.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIVQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTVSPYAYSIHIGVSEEQAKLDLQWMSDLSRTEVLLNEDVHSTSADQFVPE
FT                   RPLGQEVSEVIITGNIPWTSST"
XX
SQ   Sequence 2818 BP; 657 A; 698 C; 702 G; 761 T; 0 other;
     atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag        60
     gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt       120
     gctgcgtgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgg tgaggttccg       240
     ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct       300
     gctcctcctt tggtttcttc cgtggttggt gtttaatttc catggcagct tcgtcgaaga       360
     ggaagcgcgg gagtacatcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga       420
     cctctgcccg cagctctaac agagatgcgt tgcaggtaca gaccttcacc tggggtgaag       480
     atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg       540
     ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg       600
     tgtcagcatc agctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg       660
     tgtatgataa gtcccctact gggattactg acctgacccc atcagacatc ttcgatgtgc       720
     cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcaccgct       780
     tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg       840
     actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca       900
     agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca       960
     agggcggggc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgtg      1020
     gtgtaatcaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca      1080
     tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattaaga tgcatgcgta      1140
     gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca      1200
     cccaaaacac taaatgaaac acacccaact aatctatctg aaaatgccgg acgaggactc      1260
     gcgaaggagt ccgagattac aaagcttcga agaagctttc accctcgtac atgtaatgta      1320
     cgactgcgtt agcattgaac cattcagcct gactaggctg catttgttga agccagtctt      1380
     cgtcctcgtt cacgaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat      1440
     actttggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa catggaacaa      1500
     atttaaacgg aatgtcatct atgacattat atttggcatt ttgaattacg tggaggaagt      1560
     ccacggaatg ttgccagtaa ttatgacttc cgagacttct tgcccaagag gtctctccgg      1620
     tacgaattgg tccgcagatg tagagtgaac gtcttcgttc agcaggactt cggtcctgct      1680
     tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgatgtgtat      1740
     ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacaga      1800
     gtgttcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa      1860
     cagcgattca gctgagtact gaaactgctg caaccttgtt gcccagtcga atgggaaggt      1920
     tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgtcat      1980
     tttggcatcc ttcgtagaag gtgcgtccgc cttcttcttc ctcggacgct tgatttcttg      2040
     aaatacccca tattccgcct cggaaattgg ggatttcttg cagtatgcca atgccttctt      2100
     aggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact      2160
     tgtagtgcgc acgtattttg agcattgtac tatacaatgc agatggtgag agccatcttt      2220
     atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat      2280
     gtattccaaa aggaatacag cagtgaggtt gcacttactg tatgtgagga acaggttcct      2340
     cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg      2400
     gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc      2460
     gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt      2520
     gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat agcccttctt      2580
     atagggccgg ggggcattgg tttccgtgtg ggccggcccg gtaaagaggc agcgcaataa      2640
     tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtgctttca      2700
     tgccgggccc tatcagccca ctaagggctg tttcccgcaa tctgatatcg attttttgct      2760
     ttgactgaca tttctgcttt ggatgcggct ttaaatagac gcatcgcact tcttcgcc        2818
//