ID JQ948079; SV 1; circular; genomic DNA; STD; VRL; 2817 BP. XX AC JQ948079; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum striate mosaic virus isolate AU-QG33-2011, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2817 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2817 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 003846694776a79a4d459451f9ef7e67. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2817 FT /organism="Paspalum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-QG33-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="26.81 S 152.96 E" FT /collection_date="2011" FT /note="genotype: PSMV-A4" FT /db_xref="taxon:1072672" FT CDS 1..336 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FG19" FT /db_xref="UniProtKB/TrEMBL:J7FG19" FT /protein_id="AFN80635.1" FT /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIADFITQFRLSGLSSVTSSGFGRTGEVPPAVPTRTASEVSIPVREAVSAPPL FT VSSVVGV" FT CDS 342..1061 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FHA7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FHA7" FT /protein_id="AFN80636.1" FT /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG FT EDQAFNAGGRAILLTAFTRGSAENQRKSQETVTYKVSINLGVSASATVLKYCCKSQPLC FT WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIRGGALYLVVAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1277..1675,1762..2457)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FGG3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FGG3" FT /protein_id="AFN80637.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFVLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCTKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI FT IKSSTNKEDYLSMVRKAFPFEWATRLQQFQYSAESLFPSAPPPYVDPFGMPSQDAHPVI FT GAWLREELYTDRSPAERRRSLYICGPNRTGKTSWARSLGSHNYWQHSVDFLHVVQNAKY FT NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNQDEDWLQQMQPS FT QADWFNANAVVHYMYSGESFFEAL" FT CDS complement(1546..2457) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FHL3" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FHL3" FT /protein_id="AFN80638.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFVLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCTKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEI FT IKSSTNKEDYLSMVRKAFPFEWATRLQQFQYSAESLFPSAPPPYVDPFGMPSQDAHPVI FT GAWLREELYTVSPYAYSIHNGVSEEQAKLDLQWMSELSRTEVLLNEDVPSTSADQIVPV FT RPLGQEVLEVITTGNTPWTSST" XX SQ Sequence 2817 BP; 644 A; 700 C; 710 G; 763 T; 0 other; atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt 120 gctgcttgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgg tgaggttccg 240 ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct 300 gctcctcctt tggtttcttc cgtggttggt gtgtagtttc catggcagct tcgtcgaaga 360 ggaagcgcgg gagtacttcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga 420 cctctgcccg cagctctaac agagatgcgt tgcaggtaca gaccttcacc tggggtgaag 480 atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg 540 ccgagaacca acgcaaatcc caggagaccg ttacatacaa ggttagtatt aaccttggtg 600 tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg 660 tatacgataa gtcccctact gggattactg acctgacccc atcagacatc ttcgatgtgc 720 cgtcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcaccgct 780 tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg 840 actacacaaa cctgcctgtc tgtaacacag acaacctagt gtctgtaacg aggttcgcca 900 agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca 960 ggggcggagc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgcg 1020 gtgtaatcaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca 1080 tggggcgaac ttatgaaata aaatctcgca ttttattcat cgcattaaga tgcatgcgta 1140 gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca 1200 cccaaaacac taaatgaaac acacccaact gatctatctg aaaatgccgg acgaggactc 1260 gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta 1320 cgactgcgtt agcattgaac cagtcagcct gactaggctg catttgttga agccagtctt 1380 catcctggtt cactaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat 1440 acttcggatt tactgtaatg tctttctggc ttccaacaag ccctttccaa catggaacaa 1500 atttaaacgg aatgtcatct atgacattgt attttgcgtt ttgaactacg tggaggaagt 1560 ccacggagtg ttgccagtag ttatgacttc caagacttct tgcccaagag gtcttaccgg 1620 tacgatttgg tccgcagatg tagagggaac gtcttcgttc agcaggactt ctgtcctgct 1680 caattcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgttgtgtat 1740 ggaatacgca taaggactta cagtgtacaa ttcttctcgg agccatgctc cgataacagg 1800 atgtgcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag cggaagggaa 1860 cagcgattca gctgagtact gaaactgctg caaccttgtt gcccattcga atgggaatgc 1920 tttccttacc atagagagat agtcctcctt gtttgtggaa cttttaatga tttccgccat 1980 tttggcgtcc ttcgtagaag gagcgtctgc cttcttcttc cttgggcgct tgatttcctg 2040 aaatacccca tattccgcct cggaaattgg ggatttcttg cagtatgcaa gtgccttctt 2100 gggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact 2160 tgtagtgcgc acgtattttg tgcattgtat tatgcaatgc agatggtgag agccatcttt 2220 atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat 2280 gtattcgaga acgaatacgg ccgtgaggtt gcacttactg tatgtgagaa acaggttcct 2340 cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg 2400 gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc 2460 gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt 2520 gaaaaacttc ctgtctagac cgctgccgac tgccgagttc tccccccgat agcccttctt 2580 atagggccgg ggggtattgc tttccctgtg ggccggcccg gtaaagaggc agcgcactaa 2640 tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg 2700 cccgggcctt ctcagcccac taagggctgt ttcccgcaat ctgattttga ttttttgctt 2760 tgactgacat ttctgctttg gatgcggctt taaatagacg catcgcacta cttcgcc 2817 //