ID   JQ948078; SV 1; circular; genomic DNA; STD; VRL; 2817 BP.
XX
AC   JQ948078;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum striate mosaic virus isolate AU-QG28-2011, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2817
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2817
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; bb59cd2a9645a88f784be2b56d7f63db.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2817
FT                   /organism="Paspalum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-QG28-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="26.57 S 152.94 E"
FT                   /collection_date="2011"
FT                   /note="genotype: PSMV-A6"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..336
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FHA6"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHA6"
FT                   /protein_id="AFN80631.1"
FT                   /translation="MAEYPQSALIVSGAIPRRSQDESFSSSLKVTALSLFAAFIAACVL
FT                   SFIYKTCIADFITQFRLSGLSSVTSSGFGRTVEVPPAVPTRTASEVSIPVREAVSAPPL
FT                   VSSVVGV"
FT   CDS             342..1061
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FGG1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGG1"
FT                   /protein_id="AFN80632.1"
FT                   /translation="MAASSKRKRGSTSATKRRKKPRYTKWTATRSSNRDALQVQTFTWG
FT                   EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV
FT                   FTARGVIKVYFKSVGNQ"
FT   CDS             complement(join(1277..1675,1762..2457))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHL2"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHL2"
FT                   /protein_id="AFN80633.1"
FT                   /translation="MSSHVSETVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKNSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTDRSPAERRRSLYICGPTRTGKTTWARSLRSHNYWQHSVDFLHVIQNAKY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS
FT                   QAEWFNANAVVHYMYSGESFFEAL"
FT   CDS             complement(1546..2457)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGX0"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGX0"
FT                   /protein_id="AFN80634.1"
FT                   /translation="MSSHVSETVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKNSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTVSPYAYSIHIGVSEEQAKLDLQWMSDLSRTEVLLNEDVHSTSADQLVPV
FT                   RQLGQEVSEVIITGNIPWTSST"
XX
SQ   Sequence 2817 BP; 655 A; 696 C; 699 G; 767 T; 0 other;
     atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag        60
     gacgagagct tttcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt       120
     gctgcttgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgt tgaggttccg       240
     ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct       300
     gctcctcctt tggtttcttc cgtggtcggt gtttagtttc catggcagct tcgtcgaaga       360
     ggaagcgcgg gagtacttcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga       420
     ccgctacccg cagctctaac agagatgcgt tgcaggtaca gaccttcacc tggggtgaag       480
     atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg       540
     ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg       600
     tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg       660
     tgtatgataa atccccgact gggattactg acctgacccc atcagacatc ttcgatgtgc       720
     cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcaccgct       780
     tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg       840
     actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca       900
     agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca       960
     agggcggggc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgtg      1020
     gtgtaatcaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca      1080
     tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattaaga tgcatgcgta      1140
     gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca      1200
     cccaaaacac taaatgaaac acacccaact actctatctg aaaatgccgg acgaggactc      1260
     gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta      1320
     cgactgcgtt agcattgaac cattcagcct gactaggctg catttgttga agccagtctt      1380
     catcctcgtt cacgaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat      1440
     atttcggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa catggaacaa      1500
     atttaaacgg aatgtcatct atgacattat atttggcatt ttgaattacg tggaggaagt      1560
     ccacggaatg ttgccagtaa ttatgacttc tgagacttct tgcccaagtt gtcttaccgg      1620
     tacgagttgg tccgcagatg tagagtgaac gtcttcgttc agcaggactt cggtcctgct      1680
     tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgatgtgtat      1740
     ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacaga      1800
     gtgttcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa      1860
     cagcgattca gctgagtact gaaactgctg caaccttgtt gcccagtcga atgggaaggt      1920
     tttccttacc atcgagagat agtcctcctt gtttgtggaa tttttaatga tttccgtcat      1980
     tttggcatcc ttcgtagaag gtgcgtccgc cttcttcttc ctcggacgct tgatttcctg      2040
     aaatacccca tattccgctt cggaaattgg ggatttcttg cagtatgcca atgccttctt      2100
     aggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact      2160
     tgtagtgcgc acgtattttg agcattgtat tatacaatgc agatggtgag agccatcttt      2220
     atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat      2280
     gtattccaaa aggaatacag cagtgaggtt gcacttactg tatgtgagga acaggttcct      2340
     cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg      2400
     gctctccatt tgactgccca cttcactgta gactgtctca ctgacatgtg aggacatctc      2460
     gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt      2520
     gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat cgcccttctt      2580
     atagggccgg ggggcattgc ttttcctgtg ggccggcccg gtaaagaggc agcgcaataa      2640
     tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg      2700
     cccgggcctt atcagcccac taagggctgt ttcccgcaat ctgatttcga ttttttgctt      2760
     tgactgacat ttctgctttg gatgcggctt taaatagacg catcgcacta cttcgcc         2817
//