ID   JQ948077; SV 1; circular; genomic DNA; STD; VRL; 2806 BP.
XX
AC   JQ948077;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum dilatatum striate mosaic virus isolate AU-QG24-2011, complete
DE   genome.
XX
KW   .
XX
OS   Paspalum dilatatum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2806
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2806
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 4019f09832a9829d2e89b12267c888e6.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2806
FT                   /organism="Paspalum dilatatum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-QG24-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.53 S 153.02 E"
FT                   /collection_date="2011"
FT                   /note="genotype: PDSMV-A3"
FT                   /db_xref="taxon:1196236"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FHB0"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHB0"
FT                   /protein_id="AFN80651.1"
FT                   /translation="MAEYPQSALVVSGAIPRRSQDESFASSLKFTALSLFAAFIAACVL
FT                   SFIYKTCIAEFITQYRLSGLSSVTSSGFGRTVEDPPAVPRTASEVSIPVAVRSGIPPVI
FT                   SGASGIPGN"
FT   CDS             351..1070
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FHL5"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHL5"
FT                   /protein_id="AFN80652.1"
FT                   /translation="MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWS
FT                   EDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVALNLGVSASATVLKYCCSSQPIC
FT                   WLVYDKTPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGST
FT                   FQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAESSDIKGGALYLVIAPANGLV
FT                   FTARGVIKCYFKSVGNQ"
FT   CDS             complement(join(1278..1682,1766..2461))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FGX4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGX4"
FT                   /protein_id="AFN80654.1"
FT                   /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT
FT                   YSKCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT                   DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKKKADAPSTKDAKMASI
FT                   ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT                   GAWLREELYSQDRSPAERRRSLYICGPTRTGKTSWARSLGCHNYWQHSVDFLHVIPTAR
FT                   YNVIDDIPFKFVPCWKGIVGAQRDITVNPKYGKKRLLPNGIPSIILVNEDEDWPQYMQP
FT                   SQAAWFQDNCVVFYMNQGFRFFETTA"
FT   CDS             complement(1523..2461)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FHL6"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHL6"
FT                   /protein_id="AFN80653.1"
FT                   /translation="MASHVSETEGARGQVGAPPLQGEEVGAPGAVEACFEVRSRNVFLT
FT                   YSKCHLEPSFMLERLSRLLKKWDPTYSYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF
FT                   DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKKKADAPSTKDAKMASI
FT                   ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL
FT                   GAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISKLSRTEVLLNGEEASTSADQQELE
FT                   RLLGQEVLDVTTTGSIPWTSSTSFPLPDTTS"
XX
SQ   Sequence 2806 BP; 640 A; 718 C; 739 G; 709 T; 0 other;
     atggcggagt accctcagtc tgctttagtg gtaagtggtg cgattccacg gcgaagccag        60
     gacgagagct ttgcctcgtc tttgaagttc actgctttat ctttatttgc agcatttatt       120
     gctgcttgcg tcttgtcatt catttacaag acgtgcattg cggaattcat tacgcaatac       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgt tgaggatccg       240
     ccagctgtcc cccggacagc gtctgaggtt tcaattccag ttgctgttag aagtggtatt       300
     cctcctgtga tttcaggtgc ttccggaatt cccggaaatt gacgttggaa atgccgtctt       360
     cctcaaagag gaagaggggg agtacctcgg gtactaagcg gcgtaagaag ccgcgaacca       420
     cgaagtggac tggatcccgc agcgcatcta gagaggcgct gcaagtacag accttcacct       480
     ggagtgaaga ccaggcgttc aacgccggtg gccgagcgat ccttctctcg gcctatacgc       540
     gcggttctgg cgagaaccag cgcaaatccc aggaaaccat tacgtacaag gttgccctca       600
     accttggtgt ttccgcatcc gctacggtac tcaagtactg ctgcagcagc cagccgatat       660
     gctggctggt gtatgacaag acgcctactg ggattactga cctgaccccg tcagacatct       720
     tcgatgtgcc ctcggggtta cagaactggc cttcgacctg gaaggtcaaa cgcgaagcgt       780
     ctcaccgctt cgtggtgaaa cggcgttggc cgtttaagtt ggaatgtaac ggcagtacgt       840
     tccagaagga ctacacgaac ctgcctgtgt gcaatacgca gaacctggtg tccgtaacga       900
     ggttcgccaa gggacttgga gtgcgaacgg agtggaagga cacaacgacg gcggagtcgt       960
     cggacattaa gggcggagcc ctgtaccttg tgatagcccc tgctaacggg cttgtgttca      1020
     cagcccgtgg tgtaatcaag tgctacttta agtctgtggg aaatcagtag cccactgtaa      1080
     ttgagcccat tgggcgatct atgatctgaa ataaaatggc acattttatt tatcgcattg      1140
     cgatgaacgc gtagcgttac aaattacaat acatagcgca gcctcgggct aaagaccgag      1200
     tctgaagcga ccctagtaca ataccaccgg aaaaacaata tctatctgat aatgtctcgc      1260
     gcgtaggtgt gtaacaccta cgccgtcgtt tcgaagaaac ggaacccttg gttcatgtag      1320
     aagacgacgc agttgtcctg aaaccatgca gcctgtgatg gctgcatgta ttggggccag      1380
     tcttcatcct cgttcacgag gattatggaa ggtattccgt taggaagaag gcgtttcttc      1440
     ccgtactttg gatttacggt gatgtccctc tgtgccccaa caatcccctt ccaacaagga      1500
     acgaacttga acgggatgtc atctatgacg ttgtatctgg cagtgggaat gacgtggagg      1560
     aagtccacgg aatgctgcca gtagttgtga catccaagac ttcttgccca agaagtcttt      1620
     ccagttcttg ttggtccgca gatgtagagg cttcttcgcc gttcagcagg acttctgtcc      1680
     tgctcaattt agatatccat tggaggtcaa gcttggcttg atcctccgtg actccgttgt      1740
     gaatggaata tgcataggga cttacagaat ataattcttc tcggagccat gctccgagca      1800
     cctgatgttc tgcctgtgaa ggcatcccga agggatcaac atacggagga gggaggcagg      1860
     ggaacagcgc ttgcgctgag tattcgaact gttgcaacct tgttgcccag tcgaatggaa      1920
     attctttttt gaccatccca agatagtcct cacgtgatgt tgattgagaa ataatagacg      1980
     ccattttggc gtccttcgtg gaaggagcgt cagccttctt cttcttcttc ttcgcttcgt      2040
     ccttgaaagc cccgtgctca acgaagcata cggggccttt cttgatgtac gcaagtacct      2100
     tgtgaggtac ccgcgcgttc tgcacgttag gatgaaattc ttcgacatcg aagaatttag      2160
     cactcttagt gcgaatgtat tttctgcact gtactagaca gtgcaaatgg taagagccat      2220
     ccttgtgctc ttcccttgcg acgtatgaat acgtcgggtc ccacttctta agaagtctgg      2280
     agaggcgttc aagcatgaac gacggctcca ggtggcactt actgtatgtc aggaatacat      2340
     tcctgcttct tacctcgaag caagcttcga ccgcccctgg ggcgccaact tcctccccct      2400
     gaaggggggg ggcgccaact tgccccctgg cgccctctgt ctcactgaca tgtgaggcca      2460
     tcttggaaga agctatcgtg gatagcttca cagccgtagg atgtgctttg agatccgagg      2520
     ttttgaaaaa ctctcttgac aaccgtcgcc ccttgccccc ttccgctgct gaagggcctg      2580
     ttaaataggc cgcagcggag atggctttaa tttgggccgg cccccccgga aagtagggcg      2640
     acgagataat attaccgtcg ccctgctttg cgagggccca tgctcaacgg gcccgagcgg      2700
     tcccggccca tccactaaag attgctcccc gcattacgat aaatggattt gactgccgct      2760
     ctactttgaa cgatgtctat aaaagactgc atcgcactac gacgcc                     2806
//