Dbfetch
ID JQ948076; SV 1; circular; genomic DNA; STD; VRL; 2818 BP. XX AC JQ948076; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum striate mosaic virus isolate AU-QG2-2011, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2818 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2818 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 8ae08ff9337e08d77aa36333806abcb4. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2818 FT /organism="Paspalum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-QG2-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.55 S 152.98 E" FT /collection_date="2011" FT /note="genotype: PSMV-A6" FT /db_xref="taxon:1072672" FT CDS 1..336 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FG19" FT /db_xref="UniProtKB/TrEMBL:J7FG19" FT /protein_id="AFN80627.1" FT /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIADFITQFRLSGLSSVTSSGFGRTGEVPPAVPTRTASEVSIPVREAVSAPPL FT VSSVVGV" FT CDS 342..1061 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FGW0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FGW0" FT /protein_id="AFN80628.1" FT /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG FT EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC FT WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1277..1675,1762..2457)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FGW9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FGW9" FT /protein_id="AFN80629.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIVQCSKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI FT IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI FT GAWLRDELYTDRSPAERRRSLYICGPSRTGKTTWARSLGSHNYWQHSVDFLHVIQNAKY FT NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS FT QAEWFNANAVVHYMYEGESFFEAL" FT CDS complement(1546..2457) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FG15" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FG15" FT /protein_id="AFN80630.1" FT /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIVQCSKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI FT IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI FT GAWLRDELYTVSPYAYSIHIGVSEEQAKLDLQWMSDLSRTEVLLNEDVHSTSADQVVPE FT RPLGQEVSEVIITGNIPWTSST" XX SQ Sequence 2818 BP; 655 A; 698 C; 702 G; 763 T; 0 other; atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt 120 gctgcgtgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgg tgaggttccg 240 ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct 300 gctcctcctt tggtttcttc cgtggttggt gtttaatttc catggcagct tcgtcgaaga 360 ggaagcgcgg gagtacatcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga 420 cctctgcccg cagctctaac agagatgcgt tgcaggtaca gaccttcacc tggggtgaag 480 atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg 540 ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg 600 tgtcagcatc agctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg 660 tgtatgataa gtcccctact gggattactg acctgacccc atcagacatc ttcgatgtgc 720 cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcaccgct 780 tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg 840 actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca 900 agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca 960 agggcggggc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgtg 1020 gtgtaatcaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca 1080 tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattaaga tgcatgcgta 1140 gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca 1200 cccaaaacac taaatgaaac acacccaact aatctatctg aaaatgccgg acgaggactc 1260 gcgaaggagt ccgagattac aaagcttcga agaagctttc accctcgtac atgtaatgta 1320 cgactgcgtt agcattgaac cattcagcct gactaggctg catttgttga agccagtctt 1380 cgtcctcgtt cacgaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat 1440 actttggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa catggaacaa 1500 atttaaacgg aatgtcatct atgacattat atttggcatt ttgaattacg tggaggaagt 1560 ccacggaatg ttgccagtaa ttatgacttc cgagacttct tgcccaagtg gtctttccgg 1620 tacgacttgg tccgcagatg tagagtgaac gtcttcgttc agcaggactt cggtcctgct 1680 tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgatgtgtat 1740 ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacaga 1800 gtgttcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa 1860 cagcgattca gctgagtact gaaactgctg caaccttgtt gcccagtcga atgggaaggt 1920 tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgtcat 1980 tttggcatcc ttcgtagaag gtgcgtccgc cttcttcttc ctcggacgct tgatttcttg 2040 aaatacccca tattccgcct cggaaattgg ggatttcttg cagtatgcca atgccttctt 2100 aggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact 2160 tgtagtgcgc acgtattttg agcattgtac tatacaatgc agatggtgag agccatcttt 2220 atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat 2280 gtattccaaa aggaatacag cagtgaggtt gcacttactg tatgtgagga acaggttcct 2340 cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg 2400 gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc 2460 gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt 2520 gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat agcccttctt 2580 atagggccgg ggggcattgg tttccgtgtg ggccggcccg gtaaagaggc agcgcaataa 2640 tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtgctttca 2700 tgccgggccc tatcagccca ctaagggctg tttcccgcaa tctgatatcg attttttgct 2760 ttgactgaca tttctgcttt ggatgcggct ttaaatagac gcatcgcact tcttcgcc 2818 //