ID   JQ948070; SV 1; circular; genomic DNA; STD; VRL; 2806 BP.
XX
AC   JQ948070;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum striate mosaic virus isolate AU-846-1998, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2806
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2806
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 72c7d414dec25fc75eaab28ca7c7e4d8.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2806
FT                   /organism="Paspalum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-846-1998"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.59 S 152.84 E"
FT                   /collection_date="1998"
FT                   /note="genotype: PSMV-B2"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FHK6"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHK6"
FT                   /protein_id="AFN80603.1"
FT                   /translation="MAEYPQSAFVVTGAIPQRSQDVSFASSLKVTALSLFAAFIAACVL
FT                   SFIYKTCIADFITQFRISGLSSVTSSGFGRTAEVPPPVQRTGPEISIPVREAASAPPLV
FT                   SSSVGV"
FT   CDS             339..1058
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FGW4"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGW4"
FT                   /protein_id="AFN80604.1"
FT                   /translation="MAASSKRKRGSTSGTKRRKKARYTKWTSTRSSNRDALQVQTFTWG
FT                   EDQAFNAGGRALLLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKCPTGITDLTPSDITDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDSTTAEASDIKGGALYLVMAPANGLV
FT                   FTARGVIKVYFKSVGNQ"
FT   CDS             complement(join(1263..1673,1760..2455))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FG04"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG04"
FT                   /protein_id="AFN80605.1"
FT                   /translation="MSSPVSERVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISDAEYGVFQEIKRPRKKKVDAPSTKDAKMADI
FT                   IKSSTNKEDYLSMVRKSFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHPVI
FT                   GAWLRDELYTDRSPAERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVVQNAKY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPN
FT                   QAEWFNANAVVHYMYSGESFFEAGPATA"
FT   CDS             complement(1544..2455)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FHA0"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHA0"
FT                   /protein_id="AFN80606.1"
FT                   /translation="MSSPVSERVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISDAEYGVFQEIKRPRKKKVDAPSTKDAKMADI
FT                   IKSSTNKEDYLSMVRKSFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHPVI
FT                   GAWLRDELYTVSPYVYSIHNGVSEEQAKLDLQWMSELSRTEVQLNEDVPSIYAVQQEQE
FT                   RLHGQEVLEVTITGNTPWTSST"
XX
SQ   Sequence 2806 BP; 642 A; 713 C; 688 G; 763 T; 0 other;
     atggcggagt accctcagtc tgctttcgtt gttacgggtg cgattccaca gcgaagccag        60
     gacgtgagct ttgcttcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt       120
     gctgcttgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc       180
     cggatatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgc tgaggttccg       240
     ccacctgtcc aaaggactgg tcccgagatt tcaatacccg taagggaggc tgcttctgcg       300
     ccccctttgg tttcttcatc tgttggtgtt tagttttgat ggcagcttcg tcgaagagga       360
     agcgcgggag tacatccggc accaagcgcc gcaagaaggc gcggtacacg aagtggacct       420
     ctacccgcag ctctaacaga gatgcgttgc aagtgcaaac cttcacctgg ggtgaagacc       480
     aggcgttcaa cgccggcggc cgtgcgctac tgctcacggc cttcacacgt ggttccgccg       540
     agaaccaacg taaatcccag gagaccataa cctataaagt tagtattaac cttggtgtgt       600
     cagcatctgc taccgtcctc aagtattgct gcaagagcca gccattatgc tggctcgtgt       660
     atgataagtg ccctactggg attactgacc tgaccccatc agacatcacc gatgtgccct       720
     cggggttaca gaactggcct tctacctgga aggtcaaaag agaagcgtct catcgcttcg       780
     tcgtcaaacg gcgttggccg ttcaccctgt cctgtaacgg cagtacgttc cagaaggact       840
     acaccaacct ccctgtctgt aacacagaca acctcgtctc tgtaacgcgg ttcgccaagg       900
     gacttggtgt gcgcaccgag tggaaggaca gcacgacggc ggaggcgtcg gacatcaagg       960
     gcggagccct gtaccttgtt atggcccctg ctaacgggct tgtgtttact gctcgcggtg      1020
     taatcaaagt gtactttaag tcagtgggca atcagtagcc catttgtaat gagcccatcg      1080
     ggcgaactaa tgaaataaaa tgtgccattt tattcatcgc aatacgatgc atgcgtagca      1140
     ttaatgaaaa ttacataatt ggttttgtgg gtcgcgaggg ggaacccgga gcacgcaccc      1200
     aaaacaccca acaaacaaac ccaagataca atctatgaaa tatgcccggc gcgtgccgat      1260
     agtcacgctg tagctgggcc tgcttcgaag aagctttcac ccgagtacat gtaatgtacg      1320
     actgcgttag cattgaacca ttcagcctga ttaggctgca tttgttgaag ccagtcttca      1380
     tcctcgttca cgaggattat gcatggaatg ccatttgata gcagccgttt cttgccatac      1440
     ttcggattta ctgtaatatc cttctggctt ccgacaagcc ctttccaaca tggaacaaat      1500
     ttaaatggaa tgtcatctat tacattgtat tttgcatttt gaactacgtg gaggaagtcc      1560
     acggagtgtt gccagtaatt gtgacttcca agacttcttg cccatgaagt ctttcctgtt      1620
     cttgttggac cgcatatata gagggaacgt cttcgttcag ctggacttct gtcctgctca      1680
     attcagacat ccattggagg tcaagctttg cttgttcctc cgaaacaccg ttgtgtatgg      1740
     aatagacata aggacttaca gtgtacaatt cgtctcggag ccacgctccg ataacaggat      1800
     gttcatcctg tgatggcatc ccgaagggat ccacatacgg tggaggagtg gaagggaaca      1860
     gcgattcagc tgaatactga aactgctgca accttgttgc ccagtcgaat gggaatgatt      1920
     tcctgaccat cgagagatag tcctccttgt ttgtggaact tttaatgata tccgccattt      1980
     tggcgtcctt cgtagaagga gcgtccacct tcttcttcct tggacgcttg atttcttgaa      2040
     ataccccata ttccgcatcg gaaattgggg atttcttgca gtatgctaat gccttcttag      2100
     gcatccttgg attttgaaca tttggatgaa attctccgac gtcgaagaat tttgcacttg      2160
     tagtgcgcac gtattttgag cattgtatta tacaatgcag atggtgagag ccatctttat      2220
     gtgcctcttg tgccacgtag atatacgtgg gacagtattt cttcaataac gaagaaatgt      2280
     attccagaag gaatacagct gtgaggttgc acttactgta tgtgaggaac aggttcctcg      2340
     ctctcacctt gaagcatgaa gaggaggggg cgtcgataga ctgcccaccc cttcctgggc      2400
     tctccatttg actgcccact tcactgtaga ctctctcact gacaggtgag gacatctcgt      2460
     cagaagctat cgtggatagc ttcagagccc ttagatcttc tttgagatcc gaggttttga      2520
     aaaactctct tcctagaccg ctgccgactg ccgagttctc cccccgaagc ccttcttata      2580
     gggccggggg gcattgcttt ccctgtgggc cggcccggta aagaggcagc gcaataatat      2640
     taccgctgcc ctctttaccc gagggcccca tgctcaacgg ggaccgaggc ccgcgcccac      2700
     tcagcccact aagggctgtt tcccgcaatc tgatttcggt tttttgcttt gtctgacatt      2760
     tatgctttgg ctgcggcttt aaatagccgc atcgcactac ttcgcc                     2806
//